Analysis of interatomic Contacts of Structural Units in PDB entry:
1JTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JTI entry

There are 2 chains in PDB entry 1JTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 385
B
 GLY 1PRO 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1JTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
30 43Right-handed alpha
Helix 3
3
A
46 58Right-handed alpha
Helix 4
4
A
68 74Right-handed alpha
Helix 5
5
A
78 91Right-handed alpha
Helix 6
6
A
114 125Right-handed alpha
Helix 7
7
A
137 153Right-handed alpha
Helix 8
8
A
251 259Right-handed alpha
Helix 9
9
A
260 268Right-handed alpha
Helix 10
10
A
293 301Right-handed alpha
Helix 11
11
A
303 307Right-handed 310
Helix 12
12
B
2 22Right-handed alpha
Helix 13
13
B
30 44Right-handed alpha
Helix 14
14
B
46 58Right-handed alpha
Helix 15
15
B
68 73Right-handed alpha
Helix 16
16
B
78 91Right-handed alpha
Helix 17
17
B
114 125Right-handed alpha
Helix 18
18
B
133 153Right-handed alpha
Helix 19
19
B
189 193Right-handed 310
Helix 20
20
B
251 259Right-handed alpha
Helix 21
21
B
260 268Right-handed alpha
Helix 22
22
B
293 300Right-handed alpha
Helix 23
23
B
303 307Right-handed 310
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There are 7 sheets in PDB entry 1JTI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
274 283parallel
Strand 3
A
207 221anti-parallel
Strand 4
A
194 197first strand
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
274 283parallel
Strand 3
A
207 221anti-parallel
Strand 4
A
227 233first strand
Strand 5
A
239 246anti-parallel
Strand 6
A
364 370anti-parallel
Strand 7
A
375 382anti-parallel
Strand 8
A
27 29anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
97 108parallel
Strand 3
A
170 183anti-parallel
Strand 4
A
338 351anti-parallel
Strand 5
A
321 323first strand
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
97 108parallel
Strand 3
A
170 183anti-parallel
Strand 4
A
338 351anti-parallel
Strand 5
A
327 334first strand
Strand 6
A
285 292anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
274 283parallel
Strand 3
B
204 221anti-parallel
Strand 4
B
194 201first strand
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
274 283parallel
Strand 3
B
204 221anti-parallel
Strand 4
B
227 233first strand
Strand 5
B
239 246anti-parallel
Strand 6
B
364 370anti-parallel
Strand 7
B
376 382anti-parallel
Strand 8
B
27 29anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
97 108parallel
Strand 3
B
170 183anti-parallel
Strand 4
B
338 351anti-parallel
Strand 5
B
321 334anti-parallel
Strand 6
B
285 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il