Analysis of interatomic Contacts of Structural Units in PDB entry:
1JU2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JU2 entry

There are 2 chains in PDB entry 1JU2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1ASP 521
B
 LEU 1ASP 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1JU2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
37 46Right-handed alpha
Helix 4
4
A
59 70Right-handed 310
Helix 5
5
A
71 78Right-handed alpha
Helix 6
6
A
104 109Right-handed 310
Helix 7
7
A
130 146Right-handed alpha
Helix 8
8
A
152 165Right-handed alpha
Helix 9
9
A
196 204Right-handed 310
Helix 10
10
A
257 269Right-handed alpha
Helix 11
11
A
273 280Right-handed alpha
Helix 12
12
A
392 411Right-handed alpha
Helix 13
13
A
412 419Right-handed 310
Helix 14
14
A
442 454Right-handed alpha
Helix 15
15
A
486 490Right-handed 310
Helix 16
16
A
498 521Right-handed alpha
Helix 17
17
B
9 13Right-handed 310
Helix 18
18
B
19 21Right-handed 310
Helix 19
19
B
37 46Right-handed alpha
Helix 20
20
B
59 70Right-handed 310
Helix 21
21
B
71 78Right-handed alpha
Helix 22
22
B
104 109Right-handed 310
Helix 23
23
B
130 146Right-handed alpha
Helix 24
24
B
152 165Right-handed alpha
Helix 25
25
B
196 204Right-handed 310
Helix 26
26
B
257 269Right-handed alpha
Helix 27
27
B
273 280Right-handed alpha
Helix 28
28
B
392 411Right-handed alpha
Helix 29
29
B
415 419Right-handed 310
Helix 30
30
B
442 454Right-handed alpha
Helix 31
31
B
498 520Right-handed alpha
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There are 12 sheets in PDB entry 1JU2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
209 213parallel
Strand 3
A
51 54parallel
Strand 4
A
24 32parallel
Strand 5
A
242 255parallel
Strand 6
A
482 484parallel
Strand 7
A
242 255parallel
Strand 8
A
230 236anti-parallel
Strand 9
A
216 222anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
96 100anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
185 186anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
180 183parallel
Strand 3
A
318 321anti-parallel
Strand 4
A
325 332anti-parallel
Strand 5
A
355 362anti-parallel
Strand 6
A
299 305anti-parallel
Strand 7
A
455 456anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
286 287parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 462first strand
Strand 2
A
293 296anti-parallel
Strand 3
A
369 372anti-parallel
Strand 4
A
384 385anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
209 213parallel
Strand 3
B
51 54parallel
Strand 4
B
24 32parallel
Strand 5
B
242 255parallel
Strand 6
B
482 484parallel
Strand 7
B
242 255parallel
Strand 8
B
228 236anti-parallel
Strand 9
B
216 224anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
96 100anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
185 186anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
180 183parallel
Strand 3
B
318 321anti-parallel
Strand 4
B
325 332anti-parallel
Strand 5
B
355 362anti-parallel
Strand 6
B
299 305anti-parallel
Strand 7
B
431 432anti-parallel
Strand 8
B
299 305anti-parallel
Strand 9
B
455 456anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
286 287parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 463first strand
Strand 2
B
293 296anti-parallel
Strand 3
B
369 372anti-parallel
Strand 4
B
384 386anti-parallel
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