Analysis of interatomic Contacts of Structural Units in PDB entry:
1JV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JV1 entry

There are 2 chains in PDB entry 1JV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 501
B
 ILE 3LEU 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 1JV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
15 20Right-handed 310
Helix 3
3
A
21 25Right-handed 310
Helix 4
4
A
26 39Right-handed alpha
Helix 5
5
A
41 55Right-handed alpha
Helix 6
6
A
73 75Right-handed 310
Helix 7
7
A
83 85Right-handed 310
Helix 8
8
A
86 100Right-handed alpha
Helix 9
9
A
121 125Right-handed 310
Helix 10
10
A
134 155Right-handed alpha
Helix 11
11
A
170 181Right-handed alpha
Helix 12
12
A
182 186Right-handed 310
Helix 13
13
A
187 189Right-handed 310
Helix 14
14
A
222 224Right-handed 310
Helix 15
15
A
225 233Right-handed alpha
Helix 16
16
A
234 242Right-handed alpha
Helix 17
17
A
261 271Right-handed alpha
Helix 18
18
A
303 307Right-handed 310
Helix 19
19
A
308 314Right-handed alpha
Helix 20
20
A
335 344Right-handed alpha
Helix 21
21
A
345 349Right-handed 310
Helix 22
22
A
381 389Right-handed 310
Helix 23
23
A
398 403Right-handed alpha
Helix 24
24
A
417 436Right-handed alpha
Helix 25
25
A
477 482Right-handed alpha
Helix 26
26
B
4 13Right-handed alpha
Helix 27
27
B
15 20Right-handed 310
Helix 28
28
B
31 38Right-handed alpha
Helix 29
29
B
41 54Right-handed alpha
Helix 30
30
B
73 75Right-handed 310
Helix 31
31
B
83 85Right-handed 310
Helix 32
32
B
86 100Right-handed alpha
Helix 33
33
B
121 125Right-handed 310
Helix 34
34
B
134 155Right-handed alpha
Helix 35
35
B
170 181Right-handed alpha
Helix 36
36
B
182 186Right-handed 310
Helix 37
37
B
187 189Right-handed 310
Helix 38
38
B
222 224Right-handed 310
Helix 39
39
B
225 233Right-handed alpha
Helix 40
40
B
234 243Right-handed alpha
Helix 41
41
B
261 272Right-handed alpha
Helix 42
42
B
303 307Right-handed 310
Helix 43
43
B
308 314Right-handed alpha
Helix 44
44
B
335 344Right-handed alpha
Helix 45
45
B
345 349Right-handed 310
Helix 46
46
B
381 389Right-handed 310
Helix 47
47
B
398 403Right-handed alpha
Helix 48
48
B
417 436Right-handed alpha
Helix 49
49
B
477 482Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 1JV1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
392 397parallel
Strand 3
A
275 281parallel
Strand 4
A
325 334anti-parallel
Strand 5
A
246 251anti-parallel
Strand 6
A
103 108parallel
Strand 7
A
162 166parallel
Strand 8
A
191 195parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
218 220anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
352 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
298 302anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
367 368anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
485 486parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 466first strand
Strand 2
A
490 493parallel
Strand 3
A
496 499anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
291 295anti-parallel
Strand 3
B
298 302anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
392 396parallel
Strand 3
B
275 281parallel
Strand 4
B
325 334anti-parallel
Strand 5
B
246 251anti-parallel
Strand 6
B
103 108parallel
Strand 7
B
162 166parallel
Strand 8
B
191 195parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
218 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 356first strand
Strand 2
B
375 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 362first strand
Strand 2
B
366 368anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 440first strand
Strand 2
B
485 486parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 466first strand
Strand 2
B
490 493parallel
Strand 3
B
496 499anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il