Analysis of interatomic Contacts of Structural Units in PDB entry:
1JV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JV2 entry

There are 2 chains in PDB entry 1JV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 1GLN 956
B
GLU 55GLY 690
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1JV2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
175 180Right-handed alpha
Helix 2
2
A
187 192Right-handed alpha
Helix 3
3
A
214 218Right-handed 310
Helix 4
4
A
245 250Right-handed alpha
Helix 5
5
A
366 370Right-handed 310
Helix 6
6
A
544 548Right-handed 310
Helix 7
7
A
768 773Right-handed alpha
Helix 8
8
B
121 125Right-handed 310
Helix 9
9
B
135 144Right-handed alpha
Helix 10
10
B
170 174Right-handed 310
Helix 11
11
B
201 209Right-handed alpha
Helix 12
12
B
222 232Right-handed alpha
Helix 13
13
B
232 237Right-handed alpha
Helix 14
14
B
258 262Right-handed 310
Helix 15
15
B
281 286Right-handed 310
Helix 16
16
B
291 302Right-handed alpha
Helix 17
17
B
314 323Right-handed alpha
Helix 18
18
B
337 339Right-handed 310
Helix 19
19
B
340 352Right-handed alpha
Helix 20
20
B
573 577Right-handed 310
Helix 21
21
B
606 610Right-handed 310
Helix 22
22
B
611 616Right-handed alpha
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There are 29 sheets in PDB entry 1JV2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 12first strand
Strand 2
A
431 436anti-parallel
Strand 3
A
421 426anti-parallel
Strand 4
A
407 409anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 26first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
55 60anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 85anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 88first strand
Strand 2
A
113 114anti-parallel
Strand 3
A
123 124anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 100first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
127 131anti-parallel
Strand 4
A
137 139anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 162first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
182 186anti-parallel
Strand 4
A
207 209anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
225 229first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
252 257anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
326 329anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
360 362first strand
Strand 2
A
372 374anti-parallel
Strand 3
A
390 392anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
378 379first strand
Strand 2
A
382 383anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
534 541anti-parallel
Strand 3
A
472 482anti-parallel
Strand 4
A
440 444anti-parallel
Strand 5
A
577 578parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
534 541anti-parallel
Strand 3
A
472 482anti-parallel
Strand 4
A
447 449anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
520 524first strand
Strand 2
A
494 499anti-parallel
Strand 3
A
555 562anti-parallel
Strand 4
A
585 586anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
520 524first strand
Strand 2
A
494 499anti-parallel
Strand 3
A
555 562anti-parallel
Strand 4
A
589 592anti-parallel
Strand 5
A
453 454parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
606 610first strand
Strand 2
A
623 633anti-parallel
Strand 3
A
695 701anti-parallel
Strand 4
A
653 656anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
617 618first strand
Strand 2
A
730 737parallel
Strand 3
A
710 718anti-parallel
Strand 4
A
642 646anti-parallel
Strand 5
A
677 682anti-parallel
Strand 6
A
669 672anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
742 748first strand
Strand 2
A
775 784anti-parallel
Strand 3
A
893 902anti-parallel
Strand 4
A
813 817anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
752 754first strand
Strand 2
A
950 952parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
941 947first strand
Strand 2
A
922 930anti-parallel
Strand 3
A
792 803anti-parallel
Strand 4
A
806 807anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
941 947first strand
Strand 2
A
922 930anti-parallel
Strand 3
A
792 803anti-parallel
Strand 4
A
879 886anti-parallel
Strand 5
A
820 824anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
87 92first strand
Strand 2
B
426 431parallel
Strand 3
B
413 418anti-parallel
Strand 4
B
357 360anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 100first strand
Strand 2
B
399 402anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 105first strand
Strand 2
B
394 396anti-parallel
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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 191first strand
Strand 2
B
149 156anti-parallel
Strand 3
B
112 119parallel
Strand 4
B
243 250parallel
Strand 5
B
304 311parallel
Strand 6
B
329 333parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
553 554first strand
Strand 2
B
560 561anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
579 582first strand
Strand 2
B
585 588anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
639 642first strand
Strand 2
B
679 682parallel
Strand 3
B
667 669anti-parallel
Strand 4
B
653 654anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
657 658first strand
Strand 2
B
664 665anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il