Analysis of interatomic Contacts of Structural Units in PDB entry:
1JVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JVA entry

There are 2 chains in PDB entry 1JVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 282ARG 741
B
 ILE 279ARG 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1JVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
302 304Right-handed 310
Helix 2
2
A
416 418Right-handed 310
Helix 3
3
A
419 431Right-handed alpha
Helix 4
4
A
445 450Right-handed 310
Helix 5
5
A
451 458Right-handed alpha
Helix 6
6
A
470 479Right-handed alpha
Helix 7
7
A
486 502Right-handed alpha
Helix 8
8
A
515 529Right-handed alpha
Helix 9
9
A
567 576Right-handed alpha
Helix 10
10
A
587 593Right-handed 310
Helix 11
11
A
594 609Right-handed alpha
Helix 12
12
A
626 640Right-handed alpha
Helix 13
13
A
671 679Right-handed alpha
Helix 14
14
B
302 304Right-handed 310
Helix 15
15
B
416 418Right-handed 310
Helix 16
16
B
419 431Right-handed alpha
Helix 17
17
B
445 450Right-handed 310
Helix 18
18
B
451 458Right-handed alpha
Helix 19
19
B
470 478Right-handed alpha
Helix 20
20
B
486 502Right-handed alpha
Helix 21
21
B
515 529Right-handed alpha
Helix 22
22
B
567 576Right-handed alpha
Helix 23
23
B
588 593Right-handed 310
Helix 24
24
B
594 609Right-handed alpha
Helix 25
25
B
626 640Right-handed alpha
Helix 26
26
B
671 679Right-handed alpha
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There are 20 sheets in PDB entry 1JVA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
704 715anti-parallel
Strand 3
A
325 335anti-parallel
Strand 4
A
355 359anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
298 300anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
317 319anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 369first strand
Strand 2
A
437 443anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 379first strand
Strand 2
A
382 396anti-parallel
Strand 3
A
402 414anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
700 702anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 512first strand
Strand 2
A
544 550anti-parallel
Strand 3
A
532 534anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
583 584anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 613first strand
Strand 2
A
619 624anti-parallel
Strand 3
A
663 669anti-parallel
Strand 4
A
643 649anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 728first strand
Strand 2
A
734 736anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
740 741anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 286first strand
Strand 2
B
704 715anti-parallel
Strand 3
B
325 335anti-parallel
Strand 4
B
355 359anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 292first strand
Strand 2
B
298 300anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
317 322anti-parallel
Strand 3
B
718 719anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 443first strand
Strand 2
B
363 369anti-parallel
Strand 3
B
459 462anti-parallel
Strand 4
B
700 702anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 378first strand
Strand 2
B
383 396anti-parallel
Strand 3
B
402 414anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
508 512first strand
Strand 2
B
544 550anti-parallel
Strand 3
B
532 535anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 580first strand
Strand 2
B
583 584anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
610 613first strand
Strand 2
B
619 624anti-parallel
Strand 3
B
663 669anti-parallel
Strand 4
B
643 649anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
726 728first strand
Strand 2
B
734 736anti-parallel
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