Analysis of interatomic Contacts of Structural Units in PDB entry:
1JVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JVQ entry

There are 4 chains in PDB entry 1JVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 VAL 5VAL 431
I
 VAL 5VAL 431
C
 SER 2THR 8
D
 TRP 9PHE 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1JVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
45 68Right-handed alpha
Helix 2
2
L
79 92Right-handed alpha
Helix 3
3
L
95 106Right-handed alpha
Helix 4
4
L
107 111Right-handed 310
Helix 5
5
L
115 132Right-handed alpha
Helix 6
6
L
155 166Right-handed alpha
Helix 7
7
L
174 194Right-handed alpha
Helix 8
8
L
203 207Right-handed 310
Helix 9
9
L
264 266Right-handed 310
Helix 10
10
L
291 297Right-handed alpha
Helix 11
11
L
300 311Right-handed alpha
Helix 12
12
L
331 338Right-handed alpha
Helix 13
13
L
341 345Right-handed 310
Helix 14
14
I
11 15Right-handed 310
Helix 15
15
I
45 69Right-handed alpha
Helix 16
16
I
79 92Right-handed alpha
Helix 17
17
I
95 106Right-handed alpha
Helix 18
18
I
107 111Right-handed 310
Helix 19
19
I
115 131Right-handed alpha
Helix 20
20
I
155 167Right-handed alpha
Helix 21
21
I
178 194Right-handed alpha
Helix 22
22
I
230 234Right-handed 310
Helix 23
23
I
264 266Right-handed 310
Helix 24
24
I
291 299Right-handed alpha
Helix 25
25
I
300 310Right-handed alpha
Helix 26
26
I
331 338Right-handed alpha
Helix 27
27
I
341 345Right-handed 310
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There are 7 sheets in PDB entry 1JVQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
76 78first strand
Strand 2
L
419 426anti-parallel
Strand 3
L
408 414anti-parallel
Strand 4
L
279 285anti-parallel
Strand 5
L
268 273anti-parallel
Strand 6
L
250 262anti-parallel
Strand 7
L
312 330anti-parallel
Strand 8
L
235 236first strand
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
169 173first strand
Strand 2
L
139 149parallel
Strand 3
L
213 224anti-parallel
Strand 4
L
379 390anti-parallel
Strand 5
L
364 375anti-parallel
Strand 6
L
312 330anti-parallel
Strand 7
L
250 262anti-parallel
Strand 8
I
386 390first strand
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
355 357anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
239 240first strand
Strand 2
L
246 247anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
76 78first strand
Strand 2
I
419 426anti-parallel
Strand 3
I
408 414anti-parallel
Strand 4
I
279 285anti-parallel
Strand 5
I
268 273anti-parallel
Strand 6
I
246 262anti-parallel
Strand 7
I
235 240anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
76 78first strand
Strand 2
I
419 426anti-parallel
Strand 3
I
408 414anti-parallel
Strand 4
I
279 285anti-parallel
Strand 5
I
268 273anti-parallel
Strand 6
I
246 262anti-parallel
Strand 7
I
312 321anti-parallel
Strand 8
I
400 403parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
169 173first strand
Strand 2
I
139 149parallel
Strand 3
I
213 223anti-parallel
Strand 4
C
2 4anti-parallel
Strand 5
I
366 375anti-parallel
Strand 6
I
323 330anti-parallel
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