Analysis of interatomic Contacts of Structural Units in PDB entry:
1JYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JYF entry

There is 1 chain in PDB entry 1JYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 62ASN 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1JYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 90Right-handed alpha
Helix 2
2
A
103 117Right-handed alpha
Helix 3
3
A
129 140Right-handed alpha
Helix 4
4
A
162 177Right-handed alpha
Helix 5
5
A
191 208Right-handed alpha
Helix 6
6
A
221 235Right-handed alpha
Helix 7
7
A
246 259Right-handed alpha
Helix 8
8
A
277 282Right-handed 310
Helix 9
9
A
292 308Right-handed alpha
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There are 3 sheets in PDB entry 1JYF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
63 69parallel
Strand 3
A
122 125parallel
Strand 4
A
145 147parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
316 319parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
182 186parallel
Strand 3
A
241 244parallel
Strand 4
A
269 274parallel
Strand 5
A
287 290parallel
Strand 6
A
322 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il