Analysis of interatomic Contacts of Structural Units in PDB entry:
1K0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K0B entry

There are 4 chains in PDB entry 1K0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 108LEU 351
B
 VAL 97GLY 353
C
 SER 100GLU 354
D
 HIS 96GLU 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 1K0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
122 135Right-handed alpha
Helix 2
2
A
145 149Right-handed 310
Helix 3
3
A
153 158Right-handed alpha
Helix 4
4
A
172 174Right-handed 310
Helix 5
5
A
180 197Right-handed alpha
Helix 6
6
A
205 223Right-handed alpha
Helix 7
7
A
223 236Right-handed alpha
Helix 8
8
A
241 272Right-handed alpha
Helix 9
9
A
307 312Right-handed alpha
Helix 10
10
A
313 318Right-handed alpha
Helix 11
11
A
319 324Right-handed 310
Helix 12
12
A
326 331Right-handed alpha
Helix 13
13
A
331 343Right-handed alpha
Helix 14
14
A
344 349Right-handed alpha
Helix 15
15
B
99 106Right-handed alpha
Helix 16
16
B
122 135Right-handed alpha
Helix 17
17
B
145 152Right-handed 310
Helix 18
18
B
153 160Right-handed alpha
Helix 19
19
B
172 174Right-handed 310
Helix 20
20
B
180 197Right-handed alpha
Helix 21
21
B
205 222Right-handed alpha
Helix 22
22
B
223 236Right-handed alpha
Helix 23
23
B
241 272Right-handed alpha
Helix 24
24
B
307 312Right-handed alpha
Helix 25
25
B
313 318Right-handed alpha
Helix 26
26
B
326 331Right-handed alpha
Helix 27
27
B
331 343Right-handed alpha
Helix 28
28
B
344 353Right-handed alpha
Helix 29
29
C
101 106Right-handed alpha
Helix 30
30
C
122 135Right-handed alpha
Helix 31
31
C
149 152Right-handed 310
Helix 32
32
C
153 160Right-handed alpha
Helix 33
33
C
180 197Right-handed alpha
Helix 34
34
C
205 223Right-handed alpha
Helix 35
35
C
223 236Right-handed alpha
Helix 36
36
C
241 275Right-handed alpha
Helix 37
37
C
278 284Right-handed alpha
Helix 38
38
C
288 292Right-handed 310
Helix 39
39
C
307 318Right-handed alpha
Helix 40
40
C
319 324Right-handed 310
Helix 41
41
C
326 331Right-handed alpha
Helix 42
42
C
331 343Right-handed alpha
Helix 43
43
C
344 352Right-handed alpha
Helix 44
44
D
99 107Right-handed alpha
Helix 45
45
D
122 135Right-handed alpha
Helix 46
46
D
149 152Right-handed 310
Helix 47
47
D
153 158Right-handed alpha
Helix 48
48
D
172 174Right-handed 310
Helix 49
49
D
180 197Right-handed alpha
Helix 50
50
D
205 223Right-handed alpha
Helix 51
51
D
223 236Right-handed alpha
Helix 52
52
D
241 274Right-handed alpha
Helix 53
53
D
275 277Right-handed 310
Helix 54
54
D
278 284Right-handed alpha
Helix 55
55
D
288 292Right-handed 310
Helix 56
56
D
307 312Right-handed alpha
Helix 57
57
D
313 318Right-handed alpha
Helix 58
58
D
319 324Right-handed 310
Helix 59
59
D
326 331Right-handed alpha
Helix 60
60
D
331 344Right-handed alpha
Helix 61
61
D
344 353Right-handed alpha
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There are 4 sheets in PDB entry 1K0B. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
114 118parallel
Strand 3
A
167 170anti-parallel
Strand 4
A
176 178anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
114 118parallel
Strand 3
B
167 170anti-parallel
Strand 4
B
176 178anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 143first strand
Strand 2
C
114 118parallel
Strand 3
C
167 170anti-parallel
Strand 4
C
176 179anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 143first strand
Strand 2
D
114 118parallel
Strand 3
D
167 170anti-parallel
Strand 4
D
176 178anti-parallel
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