Analysis of interatomic Contacts of Structural Units in PDB entry:
1K2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K2V entry

There is 1 chain in PDB entry 1K2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 ALA 32GLY 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1K2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
N
42 52Right-handed alpha
Helix 2
2
N
61 69Right-handed alpha
Helix 3
3
N
88 96Right-handed alpha
Helix 4
4
N
109 117Right-handed alpha
Helix 5
5
N
129 145Right-handed alpha
Helix 6
6
N
147 166Right-handed alpha
Helix 7
7
N
167 170Right-handed 310
Helix 8
8
N
197 204Right-handed alpha
Helix 9
9
N
223 230Right-handed 310
Helix 10
10
N
242 252Right-handed alpha
Helix 11
11
N
252 258Right-handed alpha
Helix 12
12
N
258 263Right-handed alpha
Helix 13
13
N
277 293Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1K2V. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
79 80first strand
Strand 2
N
58 59parallel
Strand 3
N
38 40parallel
Strand 4
N
99 103parallel
Strand 5
N
119 122parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
82 83first strand
Strand 2
N
86 87anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
219 222first strand
Strand 2
N
187 191anti-parallel
Strand 3
N
177 184anti-parallel
Strand 4
N
234 238parallel
Strand 5
N
266 269parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il