Analysis of interatomic Contacts of Structural Units in PDB entry:
1K86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K86 entry

There are 2 chains in PDB entry 1K86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 57GLN 303
B
 THR 57GLN 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1K86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 105Right-handed alpha
Helix 2
2
A
115 129Right-handed alpha
Helix 3
3
A
159 165Right-handed alpha
Helix 4
4
A
166 175Right-handed 310
Helix 5
5
A
239 253Right-handed alpha
Helix 6
6
A
257 271Right-handed alpha
Helix 7
7
B
79 83Right-handed 310
Helix 8
8
B
89 104Right-handed alpha
Helix 9
9
B
115 128Right-handed alpha
Helix 10
10
B
159 165Right-handed alpha
Helix 11
11
B
166 175Right-handed 310
Helix 12
12
B
239 253Right-handed alpha
Helix 13
13
B
257 271Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1K86. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 112first strand
Strand 2
B
66 74parallel
Strand 3
B
134 146parallel
Strand 4
B
149 151anti-parallel
Strand 5
B
156 158anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 112first strand
Strand 2
B
66 74parallel
Strand 3
B
134 146parallel
Strand 4
B
179 186parallel
Strand 5
B
219 223parallel
Strand 6
B
290 293anti-parallel
Strand 7
A
290 293anti-parallel
Strand 8
A
219 223anti-parallel
Strand 9
A
179 186parallel
Strand 10
A
134 144parallel
Strand 11
A
66 74parallel
Strand 12
A
107 112parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
155 158anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il