Analysis of interatomic Contacts of Structural Units in PDB entry:
1KCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KCK entry

There is 1 chain in PDB entry 1KCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PRO 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1KCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
114 128Right-handed alpha
Helix 6
6
A
185 192Right-handed alpha
Helix 7
7
A
204 221Right-handed alpha
Helix 8
8
A
230 234Right-handed 310
Helix 9
9
A
235 248Right-handed alpha
Helix 10
10
A
266 276Right-handed alpha
Helix 11
11
A
282 294Right-handed alpha
Helix 12
12
A
299 314Right-handed alpha
Helix 13
13
A
316 319Right-handed 310
Helix 14
14
A
339 351Right-handed alpha
Helix 15
15
A
361 365Right-handed 310
Helix 16
16
A
372 376Right-handed 310
Helix 17
17
A
385 395Right-handed alpha
Helix 18
18
A
396 401Right-handed alpha
Helix 19
19
A
401 406Right-handed alpha
Helix 20
20
A
472 476Right-handed 310
Helix 21
21
A
537 539Right-handed 310
Helix 22
22
A
610 614Right-handed 310
Helix 23
23
A
617 621Right-handed 310
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There are 12 sheets in PDB entry 1KCK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
355 359parallel
Strand 3
A
17 20parallel
Strand 4
A
73 76parallel
Strand 5
A
131 136parallel
Strand 6
A
225 228parallel
Strand 7
A
253 256parallel
Strand 8
A
279 280parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
102 108anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
92 94anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
197 199anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
162 165anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 414first strand
Strand 2
A
418 425anti-parallel
Strand 3
A
428 435anti-parallel
Strand 4
A
487 492anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
480 482anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
469 471anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 505first strand
Strand 2
A
514 520anti-parallel
Strand 3
A
548 552anti-parallel
Strand 4
A
541 545anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 683first strand
Strand 2
A
586 594parallel
Strand 3
A
636 643anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 608first strand
Strand 2
A
647 656anti-parallel
Strand 3
A
659 662anti-parallel
Strand 4
A
647 656anti-parallel
Strand 5
A
668 671anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
559 566anti-parallel
Strand 4
A
576 581anti-parallel
Strand 5
A
508 509parallel
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