Analysis of interatomic Contacts of Structural Units in PDB entry:
1KD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KD8 entry

There are 6 chains in PDB entry 1KD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 1ALA 35
B
LYS 1ALA 35
C
GLU 1ALA 35
D
LYS 1ALA 35
E
LYS 1LYS 34
F
GLU 1ALA 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 1KD8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 35Right-handed alpha
Helix 2
2
B
1 35Right-handed alpha
Helix 3
3
C
1 35Right-handed alpha
Helix 4
4
D
1 14Right-handed alpha
Helix 5
5
D
15 35Right-handed alpha
Helix 6
6
E
1 34Right-handed alpha
Helix 7
7
F
1 35Right-handed alpha
Back to top of page
There are no sheets in PDB entry 1KD8

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il