Analysis of interatomic Contacts of Structural Units in PDB entry:
1KE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KE3 entry

There are 2 chains in PDB entry 1KE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLN 361
B
 ALA 4GLN 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1KE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 24Right-handed alpha
Helix 2
2
A
65 80Right-handed alpha
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
105 112Right-handed alpha
Helix 6
6
A
127 138Right-handed alpha
Helix 7
7
A
151 164Right-handed alpha
Helix 8
8
A
169 178Right-handed alpha
Helix 9
9
A
192 199Right-handed 310
Helix 10
10
A
216 221Right-handed alpha
Helix 11
11
A
226 239Right-handed alpha
Helix 12
12
A
240 243Right-handed 310
Helix 13
13
A
245 256Right-handed alpha
Helix 14
14
A
279 288Right-handed alpha
Helix 15
15
A
288 293Right-handed alpha
Helix 16
16
A
330 333Right-handed 310
Helix 17
17
A
345 360Right-handed alpha
Helix 18
18
B
5 24Right-handed alpha
Helix 19
19
B
65 80Right-handed alpha
Helix 20
20
B
88 93Right-handed 310
Helix 21
21
B
98 102Right-handed 310
Helix 22
22
B
105 111Right-handed alpha
Helix 23
23
B
127 138Right-handed alpha
Helix 24
24
B
151 163Right-handed alpha
Helix 25
25
B
169 178Right-handed alpha
Helix 26
26
B
192 199Right-handed 310
Helix 27
27
B
216 222Right-handed alpha
Helix 28
28
B
226 239Right-handed alpha
Helix 29
29
B
240 243Right-handed 310
Helix 30
30
B
245 256Right-handed alpha
Helix 31
31
B
279 287Right-handed alpha
Helix 32
32
B
288 293Right-handed alpha
Helix 33
33
B
330 333Right-handed 310
Helix 34
34
B
345 361Right-handed alpha
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There are 8 sheets in PDB entry 1KE3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
334 340anti-parallel
Strand 5
A
323 329anti-parallel
Strand 6
A
311 318anti-parallel
Strand 7
A
272 275anti-parallel
Strand 8
A
265 267anti-parallel
Strand 9
A
258 262anti-parallel
Strand 10
A
299 305anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
224 225anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
296 297anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
207 209anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
37 47anti-parallel
Strand 3
B
27 34anti-parallel
Strand 4
B
334 340anti-parallel
Strand 5
B
322 329anti-parallel
Strand 6
B
311 319anti-parallel
Strand 7
B
272 275anti-parallel
Strand 8
B
265 267anti-parallel
Strand 9
B
258 262anti-parallel
Strand 10
B
299 305anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
224 225anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
296 297anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il