Analysis of interatomic Contacts of Structural Units in PDB entry:
1KJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KJI entry

There are 2 chains in PDB entry 1KJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 392
B
 THR 2GLY 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1KJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 33Right-handed alpha
Helix 2
2
A
47 53Right-handed 310
Helix 3
3
A
63 75Right-handed alpha
Helix 4
4
A
87 97Right-handed alpha
Helix 5
5
A
104 112Right-handed alpha
Helix 6
6
A
113 123Right-handed alpha
Helix 7
7
A
137 149Right-handed alpha
Helix 8
8
A
170 172Right-handed 310
Helix 9
9
A
173 184Right-handed alpha
Helix 10
10
A
240 259Right-handed alpha
Helix 11
11
A
285 289Right-handed 310
Helix 12
12
A
290 295Right-handed alpha
Helix 13
13
A
298 308Right-handed alpha
Helix 14
14
A
339 343Right-handed 310
Helix 15
15
A
373 388Right-handed alpha
Helix 16
16
B
21 33Right-handed alpha
Helix 17
17
B
47 52Right-handed alpha
Helix 18
18
B
63 75Right-handed alpha
Helix 19
19
B
87 97Right-handed alpha
Helix 20
20
B
104 112Right-handed alpha
Helix 21
21
B
113 123Right-handed alpha
Helix 22
22
B
137 149Right-handed alpha
Helix 23
23
B
170 172Right-handed 310
Helix 24
24
B
173 184Right-handed alpha
Helix 25
25
B
240 259Right-handed alpha
Helix 26
26
B
285 289Right-handed 310
Helix 27
27
B
290 295Right-handed alpha
Helix 28
28
B
298 308Right-handed alpha
Helix 29
29
B
339 343Right-handed 310
Helix 30
30
B
373 388Right-handed alpha
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There are 12 sheets in PDB entry 1KJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
37 42parallel
Strand 3
A
14 18parallel
Strand 4
A
78 81parallel
Strand 5
A
100 101parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
152 156anti-parallel
Strand 4
A
166 168anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
262 271anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
214 217anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
262 271anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
221 226anti-parallel
Strand 5
A
229 235anti-parallel
Strand 6
A
321 326anti-parallel
Strand 7
A
365 370anti-parallel
Strand 8
A
348 352anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
358 361anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
389 391anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
37 42parallel
Strand 3
B
14 18parallel
Strand 4
B
78 81parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 135first strand
Strand 2
B
192 196anti-parallel
Strand 3
B
152 156anti-parallel
Strand 4
B
166 168anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 281first strand
Strand 2
B
262 271anti-parallel
Strand 3
B
202 211anti-parallel
Strand 4
B
214 217anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 281first strand
Strand 2
B
262 271anti-parallel
Strand 3
B
202 211anti-parallel
Strand 4
B
221 226anti-parallel
Strand 5
B
229 235anti-parallel
Strand 6
B
321 326anti-parallel
Strand 7
B
365 370anti-parallel
Strand 8
B
348 352anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 332first strand
Strand 2
B
358 361anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 338first strand
Strand 2
B
389 391anti-parallel
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