Analysis of interatomic Contacts of Structural Units in PDB entry:
1KJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KJU entry

There is 1 chain in PDB entry 1KJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1KJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 17Right-handed alpha
Helix 2
2
A
25 37Right-handed alpha
Helix 3
3
A
49 54Right-handed alpha
Helix 4
4
A
58 63Right-handed alpha
Helix 5
5
A
64 79Right-handed alpha
Helix 6
6
A
81 83Right-handed 310
Helix 7
7
A
84 117Right-handed alpha
Helix 8
8
A
141 145Right-handed 310
Helix 9
9
A
177 182Right-handed alpha
Helix 10
10
A
230 238Right-handed alpha
Helix 11
11
A
248 275Right-handed alpha
Helix 12
12
A
287 307Right-handed alpha
Helix 13
13
A
309 324Right-handed alpha
Helix 14
14
A
338 343Right-handed alpha
Helix 15
15
A
403 407Right-handed 310
Helix 16
16
A
408 420Right-handed alpha
Helix 17
17
A
429 432Right-handed 310
Helix 18
18
A
439 453Right-handed alpha
Helix 19
19
A
465 468Right-handed 310
Helix 20
20
A
469 479Right-handed alpha
Helix 21
21
A
517 523Right-handed alpha
Helix 22
22
A
538 555Right-handed alpha
Helix 23
23
A
580 588Right-handed alpha
Helix 24
24
A
608 612Right-handed 310
Helix 25
25
A
628 638Right-handed alpha
Helix 26
26
A
655 661Right-handed alpha
Helix 27
27
A
662 668Right-handed alpha
Helix 28
28
A
680 693Right-handed alpha
Helix 29
29
A
707 712Right-handed alpha
Helix 30
30
A
724 731Right-handed alpha
Helix 31
31
A
740 748Right-handed alpha
Helix 32
32
A
748 768Right-handed alpha
Helix 33
33
A
768 781Right-handed alpha
Helix 34
34
A
788 800Right-handed alpha
Helix 35
35
A
801 808Right-handed alpha
Helix 36
36
A
830 851Right-handed alpha
Helix 37
37
A
869 874Right-handed 310
Helix 38
38
A
893 910Right-handed alpha
Helix 39
39
A
910 915Right-handed alpha
Helix 40
40
A
921 925Right-handed 310
Helix 41
41
A
932 950Right-handed alpha
Helix 42
42
A
951 957Right-handed alpha
Helix 43
43
A
970 986Right-handed alpha
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There are 5 sheets in PDB entry 1KJU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
127 130anti-parallel
Strand 3
A
150 152anti-parallel
Strand 4
A
219 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
212 214anti-parallel
Strand 3
A
175 176anti-parallel
Strand 4
A
186 187anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
733 734anti-parallel
Strand 3
A
717 719parallel
Strand 4
A
700 702parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
620 625parallel
Strand 3
A
675 677parallel
Strand 4
A
652 654parallel
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There are 13 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
395 396anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
365 373anti-parallel
Strand 5
A
591 599anti-parallel
Strand 6
A
527 530parallel
Strand 7
A
533 536anti-parallel
Strand 8
A
527 530anti-parallel
Strand 9
A
591 599parallel
Strand 10
A
560 567anti-parallel
Strand 11
A
511 516anti-parallel
Strand 12
A
493 498anti-parallel
Strand 13
A
481 488anti-parallel
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