Analysis of interatomic Contacts of Structural Units in PDB entry:
1KKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KKQ entry

There are 8 chains in PDB entry 1KKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 200TYR 468
B
 THR 200TYR 468
C
 THR 200TYR 468
D
 THR 200TYR 468
E
 ASN 682TRP 700
F
 ASN 682TRP 700
G
 ASN 682TRP 700
H
 ASN 682TRP 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 1KKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
204 215Right-handed alpha
Helix 2
2
A
221 230Right-handed alpha
Helix 3
3
A
243 255Right-handed alpha
Helix 4
4
A
271 276Right-handed alpha
Helix 5
5
A
281 292Right-handed alpha
Helix 6
6
A
301 311Right-handed alpha
Helix 7
7
A
312 322Right-handed alpha
Helix 8
8
A
333 335Right-handed 310
Helix 9
9
A
341 345Right-handed alpha
Helix 10
10
A
350 353Right-handed 310
Helix 11
11
A
354 366Right-handed alpha
Helix 12
12
A
371 384Right-handed alpha
Helix 13
13
A
395 412Right-handed alpha
Helix 14
14
A
421 433Right-handed alpha
Helix 15
15
A
433 445Right-handed alpha
Helix 16
16
B
205 218Right-handed alpha
Helix 17
17
B
221 230Right-handed alpha
Helix 18
18
B
246 255Right-handed alpha
Helix 19
19
B
268 275Right-handed alpha
Helix 20
20
B
280 292Right-handed alpha
Helix 21
21
B
301 322Right-handed alpha
Helix 22
22
B
341 345Right-handed alpha
Helix 23
23
B
355 366Right-handed alpha
Helix 24
24
B
367 369Right-handed 310
Helix 25
25
B
371 384Right-handed alpha
Helix 26
26
B
393 416Right-handed alpha
Helix 27
27
B
421 446Right-handed alpha
Helix 28
28
C
204 213Right-handed alpha
Helix 29
29
C
213 218Right-handed alpha
Helix 30
30
C
221 230Right-handed alpha
Helix 31
31
C
243 255Right-handed alpha
Helix 32
32
C
267 272Right-handed alpha
Helix 33
33
C
282 294Right-handed alpha
Helix 34
34
C
301 312Right-handed alpha
Helix 35
35
C
314 321Right-handed alpha
Helix 36
36
C
322 325Right-handed 310
Helix 37
37
C
333 335Right-handed 310
Helix 38
38
C
341 346Right-handed alpha
Helix 39
39
C
350 354Right-handed 310
Helix 40
40
C
355 366Right-handed alpha
Helix 41
41
C
367 369Right-handed 310
Helix 42
42
C
371 384Right-handed alpha
Helix 43
43
C
395 416Right-handed alpha
Helix 44
44
C
422 442Right-handed alpha
Helix 45
45
D
203 218Right-handed alpha
Helix 46
46
D
221 229Right-handed alpha
Helix 47
47
D
243 253Right-handed alpha
Helix 48
48
D
257 262Right-handed alpha
Helix 49
49
D
274 294Right-handed alpha
Helix 50
50
D
296 300Right-handed 310
Helix 51
51
D
301 322Right-handed alpha
Helix 52
52
D
333 335Right-handed 310
Helix 53
53
D
341 345Right-handed alpha
Helix 54
54
D
351 366Right-handed alpha
Helix 55
55
D
367 369Right-handed 310
Helix 56
56
D
371 382Right-handed alpha
Helix 57
57
D
395 413Right-handed alpha
Helix 58
58
D
421 445Right-handed alpha
Helix 59
59
E
685 692Right-handed alpha
Helix 60
60
F
685 693Right-handed alpha
Helix 61
61
G
685 691Right-handed alpha
Helix 62
62
H
685 691Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1KKQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
337 340parallel
Strand 3
A
329 332anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
337 340parallel
Strand 3
B
329 332anti-parallel
Strand 4
B
325 326anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 241first strand
Strand 2
C
337 340parallel
Strand 3
C
329 332anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
239 241first strand
Strand 2
D
337 340parallel
Strand 3
D
329 332anti-parallel
Strand 4
D
325 326anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il