Analysis of interatomic Contacts of Structural Units in PDB entry:
1KMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KMJ entry

There are 2 chains in PDB entry 1KMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2HIS 363
A
 ALA 365GLY 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1KMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 11Right-handed alpha
Helix 2
2
A
12 16Right-handed 310
Helix 3
3
A
36 50Right-handed alpha
Helix 4
4
A
59 80Right-handed alpha
Helix 5
5
A
84 86Right-handed 310
Helix 6
6
A
93 105Right-handed alpha
Helix 7
7
A
105 110Right-handed alpha
Helix 8
8
A
123 126Right-handed 310
Helix 9
9
A
127 138Right-handed alpha
Helix 10
10
A
153 155Right-handed 310
Helix 11
11
A
156 161Right-handed alpha
Helix 12
12
A
182 193Right-handed alpha
Helix 13
13
A
211 216Right-handed alpha
Helix 14
14
A
225 227Right-handed 310
Helix 15
15
A
239 246Right-handed alpha
Helix 16
16
A
271 275Right-handed 310
Helix 17
17
A
280 298Right-handed alpha
Helix 18
18
A
298 318Right-handed alpha
Helix 19
19
A
343 354Right-handed alpha
Helix 20
20
A
365 372Right-handed alpha
Helix 21
21
A
387 406Right-handed alpha
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There are 5 sheets in PDB entry 1KMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
22 23anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
356 357parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
165 171parallel
Strand 6
A
115 119parallel
Strand 7
A
140 144parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
264 267anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
377 381anti-parallel
Strand 4
A
359 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il