Analysis of interatomic Contacts of Structural Units in PDB entry:
1KMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KMP entry

There is 1 chain in PDB entry 1KMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 95PHE 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1KMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
110 116Right-handed 310
Helix 2
2
A
120 125Right-handed alpha
Helix 3
3
A
136 140Right-handed 310
Helix 4
4
A
154 158Right-handed 310
Helix 5
5
A
185 187Right-handed 310
Helix 6
6
A
206 209Right-handed 310
Helix 7
7
A
315 322Right-handed alpha
Helix 8
8
A
519 523Right-handed 310
Helix 9
9
A
595 597Right-handed 310
Helix 10
10
A
598 602Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1KMP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
211 216parallel
Strand 4
A
189 195anti-parallel
Strand 5
A
104 108anti-parallel
Back to list of sheets
Back to top of page

There are 31 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 233first strand
Strand 2
A
243 251anti-parallel
Strand 3
A
258 269anti-parallel
Strand 4
A
278 289anti-parallel
Strand 5
A
295 309anti-parallel
Strand 6
A
332 346anti-parallel
Strand 7
A
352 371anti-parallel
Strand 8
A
374 377anti-parallel
Strand 9
A
400 423anti-parallel
Strand 10
A
380 397anti-parallel
Strand 11
A
352 371anti-parallel
Strand 12
A
374 377anti-parallel
Strand 13
A
400 423anti-parallel
Strand 14
A
436 457anti-parallel
Strand 15
A
460 462anti-parallel
Strand 16
A
483 502anti-parallel
Strand 17
A
465 477anti-parallel
Strand 18
A
436 457anti-parallel
Strand 19
A
460 462anti-parallel
Strand 20
A
483 502anti-parallel
Strand 21
A
505 516anti-parallel
Strand 22
A
535 547anti-parallel
Strand 23
A
551 562anti-parallel
Strand 24
A
581 593anti-parallel
Strand 25
A
604 617anti-parallel
Strand 26
A
634 642anti-parallel
Strand 27
A
647 656anti-parallel
Strand 28
A
681 692anti-parallel
Strand 29
A
699 706anti-parallel
Strand 30
A
732 740anti-parallel
Strand 31
A
224 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 717first strand
Strand 2
A
724 727anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il