Analysis of interatomic Contacts of Structural Units in PDB entry:
1KSH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KSH entry

There are 4 chains in PDB entry 1KSH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15SER 134
A
 ASN 136ARG 179
B
 SER 2GLN 85
B
 LEU 87VAL 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1KSH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 37Right-handed alpha
Helix 2
2
A
70 75Right-handed alpha
Helix 3
3
A
76 81Right-handed 310
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
98 111Right-handed alpha
Helix 6
6
A
112 116Right-handed 310
Helix 7
7
A
134 142Right-handed alpha
Helix 8
8
A
143 147Right-handed 310
Helix 9
9
A
164 178Right-handed alpha
Helix 10
10
B
2 14Right-handed alpha
Helix 11
11
B
50 56Right-handed 310
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There are 2 sheets in PDB entry 1KSH. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
119 125parallel
Strand 3
A
86 92parallel
Strand 4
A
17 22parallel
Strand 5
A
60 67parallel
Strand 6
A
50 57anti-parallel
Strand 7
B
101 109parallel
Strand 8
B
59 67anti-parallel
Strand 9
B
15 24anti-parallel
Strand 10
B
29 34anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
138 149parallel
Strand 3
B
127 135anti-parallel
Strand 4
B
71 82anti-parallel
Strand 5
B
85 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il