Analysis of interatomic Contacts of Structural Units in PDB entry:
1KWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KWP entry

There are 2 chains in PDB entry 1KWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 46LYS 385
B
 PRO 44ALA 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1KWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 62Right-handed 310
Helix 2
2
A
68 75Right-handed 310
Helix 3
3
A
101 110Right-handed alpha
Helix 4
4
A
146 151Right-handed alpha
Helix 5
5
A
160 180Right-handed alpha
Helix 6
6
A
188 190Right-handed 310
Helix 7
7
A
236 259Right-handed alpha
Helix 8
8
A
272 277Right-handed alpha
Helix 9
9
A
296 306Right-handed alpha
Helix 10
10
A
315 321Right-handed alpha
Helix 11
11
A
322 327Right-handed alpha
Helix 12
12
A
337 345Right-handed alpha
Helix 13
13
A
347 364Right-handed alpha
Helix 14
14
B
58 62Right-handed 310
Helix 15
15
B
100 113Right-handed alpha
Helix 16
16
B
145 152Right-handed alpha
Helix 17
17
B
159 180Right-handed alpha
Helix 18
18
B
188 190Right-handed 310
Helix 19
19
B
236 259Right-handed alpha
Helix 20
20
B
276 282Right-handed alpha
Helix 21
21
B
296 308Right-handed alpha
Helix 22
22
B
315 321Right-handed alpha
Helix 23
23
B
337 344Right-handed alpha
Helix 24
24
B
347 364Right-handed alpha
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There are 7 sheets in PDB entry 1KWP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
120 126anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
192 194anti-parallel
Strand 3
A
203 205anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
335 336anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
212 213anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
87 96anti-parallel
Strand 3
B
131 139anti-parallel
Strand 4
B
120 128anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
212 213anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
203 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il