Analysis of interatomic Contacts of Structural Units in PDB entry:
1L5G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1L5G entry

There are 3 chains in PDB entry 1L5G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 1GLN 956
B
GLU 55GLY 690
C
ARG 5001PHE 5004
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1L5G. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
175 180Right-handed alpha
Helix 2
2
A
188 194Right-handed alpha
Helix 3
3
A
214 218Right-handed 310
Helix 4
4
A
245 250Right-handed alpha
Helix 5
5
A
339 342Right-handed 310
Helix 6
6
A
366 370Right-handed 310
Helix 7
7
A
544 548Right-handed 310
Helix 8
8
A
768 773Right-handed alpha
Helix 9
9
B
132 144Right-handed alpha
Helix 10
10
B
170 174Right-handed 310
Helix 11
11
B
199 210Right-handed alpha
Helix 12
12
B
222 232Right-handed alpha
Helix 13
13
B
232 237Right-handed alpha
Helix 14
14
B
258 262Right-handed 310
Helix 15
15
B
281 285Right-handed 310
Helix 16
16
B
291 302Right-handed alpha
Helix 17
17
B
314 323Right-handed alpha
Helix 18
18
B
342 352Right-handed alpha
Helix 19
19
B
564 568Right-handed 310
Helix 20
20
B
573 577Right-handed 310
Helix 21
21
B
606 610Right-handed 310
Helix 22
22
B
611 619Right-handed alpha
Helix 23
23
B
623 628Right-handed alpha
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There are 24 sheets in PDB entry 1L5G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 26first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
67 69anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 88first strand
Strand 2
A
113 114anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 100first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
135 139anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 163first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
208 209anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
225 229first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
326 329anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 346first strand
Strand 2
A
358 362anti-parallel
Strand 3
A
372 379anti-parallel
Strand 4
A
382 392anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
408 410first strand
Strand 2
A
422 426anti-parallel
Strand 3
A
431 435anti-parallel
Strand 4
A
9 12anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
577 578first strand
Strand 2
A
440 445parallel
Strand 3
A
479 482anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
448 449first strand
Strand 2
A
469 476anti-parallel
Strand 3
A
461 462anti-parallel
Strand 4
A
469 476anti-parallel
Strand 5
A
537 542anti-parallel
Strand 6
A
511 513anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
520 522first strand
Strand 2
A
496 498anti-parallel
Strand 3
A
555 560anti-parallel
Strand 4
A
586 590anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
606 610first strand
Strand 2
A
623 633anti-parallel
Strand 3
A
691 692anti-parallel
Strand 4
A
623 633anti-parallel
Strand 5
A
696 701anti-parallel
Strand 6
A
653 655anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
616 618first strand
Strand 2
A
730 737parallel
Strand 3
A
710 718anti-parallel
Strand 4
A
642 646anti-parallel
Strand 5
A
681 682anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
671 672first strand
Strand 2
A
677 678anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
742 748first strand
Strand 2
A
777 784anti-parallel
Strand 3
A
893 902anti-parallel
Strand 4
A
810 817anti-parallel
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There are 10 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
752 754first strand
Strand 2
A
941 952parallel
Strand 3
A
917 930anti-parallel
Strand 4
A
871 872parallel
Strand 5
A
917 930parallel
Strand 6
A
792 803anti-parallel
Strand 7
A
806 807anti-parallel
Strand 8
A
792 803anti-parallel
Strand 9
A
878 886anti-parallel
Strand 10
A
820 824anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 197first strand
Strand 2
B
149 156anti-parallel
Strand 3
B
112 119parallel
Strand 4
B
243 250parallel
Strand 5
B
304 310parallel
Strand 6
B
329 332parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 64first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
425 428parallel
Strand 4
B
413 418anti-parallel
Strand 5
B
355 360anti-parallel
Strand 6
B
385 386anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
380 381first strand
Strand 2
B
369 373anti-parallel
Strand 3
B
394 402anti-parallel
Strand 4
B
97 105anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
553 554first strand
Strand 2
B
560 561anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
579 581first strand
Strand 2
B
586 588anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
639 640first strand
Strand 2
B
677 680parallel
Strand 3
B
664 671anti-parallel
Strand 4
B
653 658anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il