Analysis of interatomic Contacts of Structural Units in PDB entry:
1LB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LB4 entry

There is 1 chain in PDB entry 1LB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 348GLU 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1LB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
359 369Right-handed alpha
Helix 2
2
A
418 422Right-handed 310
Helix 3
3
A
439 443Right-handed 310
Helix 4
4
A
480 485Right-handed 310
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There are 3 sheets in PDB entry 1LB4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 357first strand
Strand 2
A
493 501anti-parallel
Strand 3
A
428 434anti-parallel
Strand 4
A
446 451anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 478first strand
Strand 2
A
406 413anti-parallel
Strand 3
A
388 395anti-parallel
Strand 4
A
373 376anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 478first strand
Strand 2
A
406 413anti-parallel
Strand 3
A
388 395anti-parallel
Strand 4
A
380 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il