Analysis of interatomic Contacts of Structural Units in PDB entry:
1LB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LB6 entry

There are 2 chains in PDB entry 1LB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 347THR 501
B
LYS 601PHE 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1LB6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
359 369Right-handed alpha
Helix 2
2
A
418 422Right-handed 310
Helix 3
3
A
456 460Right-handed 310
Helix 4
4
A
480 484Right-handed 310
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There are 3 sheets in PDB entry 1LB6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
351 357first strand
Strand 2
A
493 500anti-parallel
Strand 3
A
429 434anti-parallel
Strand 4
A
446 451anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
605 608first strand
Strand 2
A
469 478anti-parallel
Strand 3
A
406 414anti-parallel
Strand 4
A
388 395anti-parallel
Strand 5
A
373 376anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
605 608first strand
Strand 2
A
469 478anti-parallel
Strand 3
A
406 414anti-parallel
Strand 4
A
388 395anti-parallel
Strand 5
A
380 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il