Analysis of interatomic Contacts of Structural Units in PDB entry:
1LCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LCP entry

There are 2 chains in PDB entry 1LCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLN 484
B
 THR 1GLN 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1LCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
34 40Right-handed alpha
Helix 3
3
A
84 102Right-handed alpha
Helix 4
4
A
116 126Right-handed alpha
Helix 5
5
A
151 172Right-handed alpha
Helix 6
6
A
180 194Right-handed alpha
Helix 7
7
A
205 210Right-handed alpha
Helix 8
8
A
214 220Right-handed alpha
Helix 9
9
A
275 288Right-handed alpha
Helix 10
10
A
334 348Right-handed alpha
Helix 11
11
A
363 367Right-handed alpha
Helix 12
12
A
380 392Right-handed alpha
Helix 13
13
A
405 409Right-handed alpha
Helix 14
14
A
428 436Right-handed alpha
Helix 15
15
A
472 482Right-handed alpha
Helix 16
16
B
22 30Right-handed alpha
Helix 17
17
B
34 40Right-handed alpha
Helix 18
18
B
84 102Right-handed alpha
Helix 19
19
B
116 126Right-handed alpha
Helix 20
20
B
151 172Right-handed alpha
Helix 21
21
B
180 194Right-handed alpha
Helix 22
22
B
205 210Right-handed alpha
Helix 23
23
B
214 220Right-handed alpha
Helix 24
24
B
275 288Right-handed alpha
Helix 25
25
B
334 348Right-handed alpha
Helix 26
26
B
363 367Right-handed alpha
Helix 27
27
B
380 392Right-handed alpha
Helix 28
28
B
405 409Right-handed alpha
Helix 29
29
B
428 436Right-handed alpha
Helix 30
30
B
472 482Right-handed alpha
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There are 8 sheets in PDB entry 1LCP. Click on sheet of interest to get list of strands forming it: 1, 2, 3, 4, 5, 6, 7, 8,

There are 5 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
106 111parallel
Strand 5
A
142 146parallel
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There are 8 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
245 255anti-parallel
Strand 4
A
295 305parallel
Strand 5
A
353 358parallel
Strand 6
A
373 377anti-parallel
Strand 7
A
397 399parallel
Strand 8
A
445 449anti-parallel
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There are 3 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 320first strand
Strand 2
A
323 328anti-parallel
Strand 3
A
417 420parallel
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There are 2 strands in 4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
466 467anti-parallel
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There are 5 strands in 5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
49 56anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
106 111parallel
Strand 5
B
142 146parallel
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There are 8 strands in 6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 203first strand
Strand 2
B
228 235anti-parallel
Strand 3
B
245 255anti-parallel
Strand 4
B
295 305parallel
Strand 5
B
353 358parallel
Strand 6
B
373 377anti-parallel
Strand 7
B
397 399parallel
Strand 8
B
445 449anti-parallel
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There are 3 strands in 7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 320first strand
Strand 2
B
323 328anti-parallel
Strand 3
B
417 420parallel
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There are 2 strands in 8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 456first strand
Strand 2
B
466 467anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il