Analysis of interatomic Contacts of Structural Units in PDB entry:
1LDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LDJ entry

There are 2 chains in PDB entry 1LDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 17ALA 776
B
 LYS 19TYR 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1LDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
38 53Right-handed alpha
Helix 3
3
A
86 106Right-handed alpha
Helix 4
4
A
114 137Right-handed alpha
Helix 5
5
A
137 144Right-handed alpha
Helix 6
6
A
158 166Right-handed alpha
Helix 7
7
A
167 172Right-handed alpha
Helix 8
8
A
177 188Right-handed alpha
Helix 9
9
A
198 211Right-handed alpha
Helix 10
10
A
225 232Right-handed alpha
Helix 11
11
A
232 255Right-handed alpha
Helix 12
12
A
260 274Right-handed alpha
Helix 13
13
A
284 296Right-handed alpha
Helix 14
14
A
300 313Right-handed alpha
Helix 15
15
A
317 329Right-handed alpha
Helix 16
16
A
332 356Right-handed alpha
Helix 17
17
A
358 361Right-handed 310
Helix 18
18
A
362 383Right-handed alpha
Helix 19
19
A
388 405Right-handed alpha
Helix 20
20
A
406 413Right-handed alpha
Helix 21
21
A
416 431Right-handed alpha
Helix 22
22
A
438 454Right-handed alpha
Helix 23
23
A
458 476Right-handed alpha
Helix 24
24
A
481 526Right-handed alpha
Helix 25
25
A
556 558Right-handed 310
Helix 26
26
A
559 570Right-handed alpha
Helix 27
27
A
583 586Right-handed 310
Helix 28
28
A
604 613Right-handed alpha
Helix 29
29
A
614 616Right-handed 310
Helix 30
30
A
622 629Right-handed alpha
Helix 31
31
A
632 646Right-handed alpha
Helix 32
32
A
690 722Right-handed alpha
Helix 33
33
A
727 739Right-handed alpha
Helix 34
34
A
745 759Right-handed alpha
Helix 35
35
B
54 59Right-handed alpha
Helix 36
36
B
81 89Right-handed alpha
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There are 5 sheets in PDB entry 1LDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 541first strand
Strand 2
B
26 33parallel
Strand 3
A
579 581anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 602first strand
Strand 2
A
589 592anti-parallel
Strand 3
B
22 24anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 621first strand
Strand 2
A
668 671anti-parallel
Strand 3
A
649 650anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
771 774anti-parallel
Strand 3
A
762 764anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
79 80anti-parallel
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