Analysis of interatomic Contacts of Structural Units in PDB entry:
1LH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LH9 entry

There is 1 chain in PDB entry 1LH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ARG 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1LH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 76Right-handed 310
Helix 2
2
A
86 95Right-handed alpha
Helix 3
3
A
112 116Right-handed 310
Helix 4
4
A
120 124Right-handed 310
Helix 5
5
A
151 159Right-handed alpha
Helix 6
6
A
172 182Right-handed alpha
Helix 7
7
A
182 187Right-handed alpha
Helix 8
8
A
208 212Right-handed 310
Helix 9
9
A
231 236Right-handed 310
Helix 10
10
A
241 252Right-handed alpha
Helix 11
11
A
264 275Right-handed alpha
Helix 12
12
A
287 289Right-handed 310
Helix 13
13
A
290 302Right-handed alpha
Helix 14
14
A
439 444Right-handed 310
Helix 15
15
A
471 475Right-handed 310
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There are 5 sheets in PDB entry 1LH9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
374 380parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
307 310anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
349 352anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
344 346anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
63 70parallel
Strand 4
A
193 200parallel
Strand 5
A
256 261parallel
Strand 6
A
279 283parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
451 453anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il