Analysis of interatomic Contacts of Structural Units in PDB entry:
1LJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LJY entry

There is 1 chain in PDB entry 1LJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1VAL 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1LJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
15 19Right-handed 310
Helix 3
3
A
21 25Right-handed 310
Helix 4
4
A
51 66Right-handed alpha
Helix 5
5
A
81 91Right-handed alpha
Helix 6
6
A
91 110Right-handed alpha
Helix 7
7
A
125 144Right-handed alpha
Helix 8
8
A
145 147Right-handed 310
Helix 9
9
A
160 168Right-handed alpha
Helix 10
10
A
169 175Right-handed alpha
Helix 11
11
A
215 227Right-handed alpha
Helix 12
12
A
229 231Right-handed 310
Helix 13
13
A
275 282Right-handed alpha
Helix 14
14
A
309 323Right-handed alpha
Helix 15
15
A
349 361Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1LJY.

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
32 41parallel
Strand 3
A
44 46anti-parallel
Strand 4
A
32 41anti-parallel
Strand 5
A
70 77parallel
Strand 6
A
113 118parallel
Strand 7
A
152 157parallel
Strand 8
A
179 182parallel
Strand 9
A
233 237parallel
Strand 10
A
327 330parallel
Strand 11
A
2 8parallel
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