Analysis of interatomic Contacts of Structural Units in PDB entry:
1LPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LPB entry

There are 2 chains in PDB entry 1LPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6VAL 90
B
 LYS 1CYS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1LPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
31 34Right-handed alpha
Helix 2
B
A
56 61Right-handed alpha
Helix 3
J
A
75 80Right-handed alpha
Helix 4
D
B
107 110Right-handed alpha
Helix 5
E
B
114 139Right-handed alpha
Helix 6
F
B
153 163Right-handed alpha
Helix 7
G
B
241 245Right-handed alpha
Helix 8
H
B
251 274Right-handed alpha
Helix 9
I
B
288 292Right-handed alpha
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There are 6 sheets in PDB entry 1LPB. Click on sheet of interest to get list of strands forming it: SA, SB, SC, SD, SE, SF,

There are 2 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
A
9 12anti-parallel
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There are 9 strands in SB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
50 52anti-parallel
Strand 3
A
70 74anti-parallel
Strand 4
B
100 105parallel
Strand 5
B
146 151parallel
Strand 6
B
171 175parallel
Strand 7
B
199 202parallel
Strand 8
B
224 228parallel
Strand 9
B
323 327parallel
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There are 4 strands in SC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 348first strand
Strand 2
B
381 388anti-parallel
Strand 3
B
415 424anti-parallel
Strand 4
B
429 433anti-parallel
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There are 4 strands in SD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
369 376anti-parallel
Strand 3
B
395 403anti-parallel
Strand 4
B
444 448anti-parallel
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There are 1 strands in SE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
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There are 1 strands in SF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il