Analysis of interatomic Contacts of Structural Units in PDB entry:
1LTS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LTS entry

There are 7 chains in PDB entry 1LTS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ALA 1ASN 103
E
 ALA 1ASN 103
F
 ALA 1ASN 103
G
 ALA 1ASN 103
H
 ALA 1ASN 103
A
 ARG 4GLY 188
C
 GLY 196ILE 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1LTS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
DA1
D
5 10Right-handed alpha
Helix 2
DA2
D
61 77Right-handed alpha
Helix 3
EA1
E
5 10Right-handed alpha
Helix 4
EA2
E
59 78Right-handed alpha
Helix 5
FA1
F
5 9Right-handed alpha
Helix 6
FA2
F
59 78Right-handed alpha
Helix 7
GA1
G
5 9Right-handed alpha
Helix 8
GA2
G
59 78Right-handed alpha
Helix 9
HA1
H
5 9Right-handed alpha
Helix 10
HA2
H
59 77Right-handed alpha
Helix 11
AA1
A
13 19Right-handed alpha
Helix 12
AA2
A
41 46Right-handed alpha
Helix 13
AA3
A
66 76Right-handed alpha
Helix 14
AA4
A
97 101Right-handed alpha
Helix 15
AA5
A
102 104Right-handed 310
Helix 16
AA6
A
108 110Right-handed 310
Helix 17
AA7
A
121 123Right-handed 310
Helix 18
AA8
A
147 152Right-handed alpha
Helix 19
AA9
A
158 161Right-handed alpha
Helix 20
A10
A
162 164Right-handed 310
Helix 21
A11
A
172 175Right-handed 310
Helix 22
A12
A
179 182Right-handed 310
Helix 23
CA1
C
197 222Right-handed alpha
Helix 24
CA2
C
223 226Right-handed 310
Helix 25
CA3
C
232 236Right-handed alpha
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There are 6 sheets in PDB entry 1LTS. Click on sheet of interest to get list of strands forming it: BB1, BB2, BB3, BB4, BB5, BA1,

There are 6 strands in BB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 22first strand
Strand 2
D
82 88anti-parallel
Strand 3
D
94 102anti-parallel
Strand 4
E
26 30anti-parallel
Strand 5
E
37 41anti-parallel
Strand 6
E
47 50anti-parallel
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There are 6 strands in BB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 22first strand
Strand 2
E
82 88anti-parallel
Strand 3
E
94 102anti-parallel
Strand 4
F
26 30anti-parallel
Strand 5
F
38 41anti-parallel
Strand 6
F
47 50anti-parallel
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There are 6 strands in BB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
15 22first strand
Strand 2
F
82 88anti-parallel
Strand 3
F
94 102anti-parallel
Strand 4
G
26 30anti-parallel
Strand 5
G
38 41anti-parallel
Strand 6
G
47 50anti-parallel
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There are 6 strands in BB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
15 22first strand
Strand 2
G
81 88anti-parallel
Strand 3
G
94 102anti-parallel
Strand 4
H
26 30anti-parallel
Strand 5
H
38 41anti-parallel
Strand 6
H
47 50anti-parallel
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There are 6 strands in BB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
15 22first strand
Strand 2
H
82 88anti-parallel
Strand 3
H
94 102anti-parallel
Strand 4
D
26 30anti-parallel
Strand 5
D
37 41anti-parallel
Strand 6
D
47 50anti-parallel
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There are 7 strands in BA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
4 9anti-parallel
Strand 5
A
82 89anti-parallel
Strand 6
A
124 131anti-parallel
Strand 7
A
134 141anti-parallel
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