Analysis of interatomic Contacts of Structural Units in PDB entry:
1LV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LV5 entry

There are 6 chains in PDB entry 1LV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 20 A 29
D
 A 1 G 14
E
 G 20 A 29
F
 A 1 G 14
A
 ALA 297LYS 876
B
 ALA 297LYS 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 1LV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
308 312Right-handed 310
Helix 2
2
A
347 352Right-handed alpha
Helix 3
3
A
354 363Right-handed alpha
Helix 4
4
A
372 382Right-handed alpha
Helix 5
5
A
394 402Right-handed alpha
Helix 6
6
A
403 406Right-handed 310
Helix 7
7
A
409 416Right-handed alpha
Helix 8
8
A
424 430Right-handed alpha
Helix 9
9
A
431 435Right-handed 310
Helix 10
10
A
439 468Right-handed alpha
Helix 11
11
A
470 476Right-handed alpha
Helix 12
12
A
477 492Right-handed alpha
Helix 13
13
A
496 513Right-handed alpha
Helix 14
14
A
515 523Right-handed alpha
Helix 15
15
A
530 537Right-handed alpha
Helix 16
16
A
557 562Right-handed alpha
Helix 17
17
A
570 586Right-handed alpha
Helix 18
18
A
587 593Right-handed alpha
Helix 19
19
A
630 635Right-handed alpha
Helix 20
20
A
636 638Right-handed 310
Helix 21
21
A
656 667Right-handed alpha
Helix 22
22
A
668 677Right-handed alpha
Helix 23
23
A
680 690Right-handed alpha
Helix 24
24
A
693 697Right-handed 310
Helix 25
25
A
698 714Right-handed alpha
Helix 26
26
A
717 725Right-handed alpha
Helix 27
27
A
728 743Right-handed alpha
Helix 28
28
A
743 761Right-handed alpha
Helix 29
29
A
774 778Right-handed 310
Helix 30
30
A
780 818Right-handed alpha
Helix 31
31
A
840 855Right-handed alpha
Helix 32
32
B
308 313Right-handed 310
Helix 33
33
B
347 352Right-handed alpha
Helix 34
34
B
354 362Right-handed alpha
Helix 35
35
B
372 382Right-handed alpha
Helix 36
36
B
394 402Right-handed alpha
Helix 37
37
B
403 406Right-handed 310
Helix 38
38
B
409 416Right-handed alpha
Helix 39
39
B
425 430Right-handed alpha
Helix 40
40
B
439 468Right-handed alpha
Helix 41
41
B
470 476Right-handed alpha
Helix 42
42
B
477 492Right-handed alpha
Helix 43
43
B
496 520Right-handed alpha
Helix 44
44
B
533 539Right-handed alpha
Helix 45
45
B
557 562Right-handed alpha
Helix 46
46
B
564 568Right-handed 310
Helix 47
47
B
569 584Right-handed alpha
Helix 48
48
B
586 595Right-handed alpha
Helix 49
49
B
633 639Right-handed 310
Helix 50
50
B
656 667Right-handed alpha
Helix 51
51
B
668 677Right-handed alpha
Helix 52
52
B
680 691Right-handed alpha
Helix 53
53
B
698 714Right-handed alpha
Helix 54
54
B
717 725Right-handed alpha
Helix 55
55
B
728 743Right-handed alpha
Helix 56
56
B
743 761Right-handed alpha
Helix 57
57
B
774 778Right-handed 310
Helix 58
58
B
780 818Right-handed alpha
Helix 59
59
B
840 854Right-handed alpha
Helix 60
60
B
871 875Right-handed 310
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There are 10 sheets in PDB entry 1LV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
342 346parallel
Strand 3
A
334 339anti-parallel
Strand 4
A
315 321anti-parallel
Strand 5
A
367 370parallel
Strand 6
A
390 393parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
640 641anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 607first strand
Strand 2
A
617 619anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 827first strand
Strand 2
A
832 837anti-parallel
Strand 3
A
647 652anti-parallel
Strand 4
A
866 869anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 764first strand
Strand 2
A
770 772anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
342 346parallel
Strand 3
B
335 339anti-parallel
Strand 4
B
315 320anti-parallel
Strand 5
B
367 370parallel
Strand 6
B
390 393parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
493 494first strand
Strand 2
B
601 602anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
605 606first strand
Strand 2
B
618 619anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
823 827first strand
Strand 2
B
831 837anti-parallel
Strand 3
B
647 654anti-parallel
Strand 4
B
864 869anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
762 764first strand
Strand 2
B
770 772anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il