Analysis of interatomic Contacts of Structural Units in PDB entry:
1LVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LVA entry

There is 1 chain in PDB entry 1LVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 377ASN 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1LVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
378 389Right-handed alpha
Helix 2
2
A
396 404Right-handed alpha
Helix 3
3
A
406 420Right-handed alpha
Helix 4
4
A
437 458Right-handed alpha
Helix 5
5
A
466 474Right-handed alpha
Helix 6
6
A
478 492Right-handed alpha
Helix 7
7
A
512 530Right-handed alpha
Helix 8
8
A
535 543Right-handed alpha
Helix 9
9
A
546 560Right-handed alpha
Helix 10
10
A
574 589Right-handed alpha
Helix 11
11
A
594 603Right-handed alpha
Helix 12
12
A
605 619Right-handed alpha
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There are 4 sheets in PDB entry 1LVA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
431 436anti-parallel
Strand 3
A
423 428anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
501 504anti-parallel
Strand 3
A
495 498anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
571 573anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 625first strand
Strand 2
A
628 631anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il