Analysis of interatomic Contacts of Structural Units in PDB entry:
1M06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M06 entry

There are 3 chains in PDB entry 1M06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
ARG 10SER 431
G
MET 1LYS 187
J
MET 1PHE 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1M06. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
F
74 79Right-handed alpha
Helix 2
2
F
79 89Right-handed alpha
Helix 3
3
F
90 92Right-handed 310
Helix 4
4
F
107 111Right-handed 310
Helix 5
5
F
122 136Right-handed alpha
Helix 6
6
F
148 152Right-handed 310
Helix 7
7
F
153 160Right-handed alpha
Helix 8
8
F
192 213Right-handed alpha
Helix 9
9
F
215 223Right-handed alpha
Helix 10
10
F
301 306Right-handed alpha
Helix 11
11
F
310 315Right-handed alpha
Helix 12
12
F
317 322Right-handed alpha
Helix 13
13
F
349 353Right-handed 310
Helix 14
14
F
360 366Right-handed 310
Helix 15
15
F
383 389Right-handed alpha
Helix 16
16
F
391 399Right-handed 310
Helix 17
17
F
423 429Right-handed alpha
Helix 18
18
G
115 117Right-handed 310
Helix 19
19
J
2 6Right-handed 310
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There are 8 sheets in PDB entry 1M06. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
247 251first strand
Strand 2
F
261 277anti-parallel
Strand 3
F
41 52anti-parallel
Strand 4
F
407 419anti-parallel
Strand 5
F
11 14anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
247 251first strand
Strand 2
F
261 277anti-parallel
Strand 3
F
41 52anti-parallel
Strand 4
F
407 419anti-parallel
Strand 5
F
17 23anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
161 162first strand
Strand 2
F
27 36anti-parallel
Strand 3
F
282 291anti-parallel
Strand 4
F
63 73anti-parallel
Strand 5
F
236 245anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
97 99first strand
Strand 2
F
119 121anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
327 330first strand
Strand 2
F
343 346anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
17 24first strand
Strand 2
G
45 54parallel
Strand 3
G
165 175anti-parallel
Strand 4
G
78 89anti-parallel
Strand 5
G
131 141anti-parallel
Strand 6
G
126 127anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
32 34first strand
Strand 2
G
111 113anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
62 69first strand
Strand 2
G
150 159anti-parallel
Strand 3
G
96 104anti-parallel
Strand 4
G
118 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il