Analysis of interatomic Contacts of Structural Units in PDB entry:
1M0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M0D entry

There are 4 chains in PDB entry 1M0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 17LYS 145
B
 SER 17LYS 145
C
 SER 17LYS 145
D
 SER 17LYS 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1M0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
71 85Right-handed alpha
Helix 3
3
A
108 117Right-handed alpha
Helix 4
4
A
126 132Right-handed alpha
Helix 5
5
A
138 142Right-handed 310
Helix 6
6
B
17 30Right-handed alpha
Helix 7
7
B
71 85Right-handed alpha
Helix 8
8
B
108 117Right-handed alpha
Helix 9
9
B
126 132Right-handed alpha
Helix 10
10
B
138 142Right-handed 310
Helix 11
11
C
17 30Right-handed alpha
Helix 12
12
C
71 85Right-handed alpha
Helix 13
13
C
108 116Right-handed alpha
Helix 14
14
C
126 131Right-handed alpha
Helix 15
15
C
138 142Right-handed 310
Helix 16
16
D
17 29Right-handed alpha
Helix 17
17
D
71 85Right-handed alpha
Helix 18
18
D
108 117Right-handed alpha
Helix 19
19
D
126 131Right-handed alpha
Helix 20
20
D
138 142Right-handed 310
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There are 8 sheets in PDB entry 1M0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
B
56 57anti-parallel
Strand 3
B
63 67anti-parallel
Strand 4
B
90 94parallel
Strand 5
B
120 122parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
A
39 45anti-parallel
Strand 3
B
143 144anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
B
39 45anti-parallel
Strand 3
A
143 144anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
90 94parallel
Strand 3
A
63 67parallel
Strand 4
A
56 57anti-parallel
Strand 5
B
35 36anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
D
56 57anti-parallel
Strand 3
D
63 67anti-parallel
Strand 4
D
90 94parallel
Strand 5
D
120 122parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 52first strand
Strand 2
C
39 45anti-parallel
Strand 3
D
143 144anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 52first strand
Strand 2
D
41 45anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
63 67anti-parallel
Strand 3
C
90 94parallel
Strand 4
C
120 122parallel
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