Analysis of interatomic Contacts of Structural Units in PDB entry:
1M10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M10 entry

There are 2 chains in PDB entry 1M10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 505PRO 703
B
 HIS 1LEU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1M10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
526 543Right-handed alpha
Helix 2
2
A
573 583Right-handed alpha
Helix 3
3
A
593 605Right-handed alpha
Helix 4
4
A
627 632Right-handed 310
Helix 5
5
A
633 643Right-handed alpha
Helix 6
6
A
658 667Right-handed alpha
Helix 7
7
A
679 681Right-handed 310
Helix 8
8
A
682 696Right-handed alpha
Helix 9
9
B
49 52Right-handed 310
Helix 10
10
B
213 222Right-handed alpha
Helix 11
11
B
223 226Right-handed 310
Helix 12
12
B
243 246Right-handed 310
Helix 13
13
B
255 259Right-handed 310
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There are 3 sheets in PDB entry 1M10. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 677first strand
Strand 2
A
646 653parallel
Strand 3
A
615 621parallel
Strand 4
A
513 520parallel
Strand 5
A
551 558parallel
Strand 6
A
562 564anti-parallel
Strand 7
B
237 241anti-parallel
Strand 8
B
228 232anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
12 16anti-parallel
Strand 3
B
35 37parallel
Strand 4
B
59 61parallel
Strand 5
B
81 83parallel
Strand 6
B
104 106parallel
Strand 7
B
128 130parallel
Strand 8
B
152 154parallel
Strand 9
B
176 178parallel
Strand 10
B
199 201parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
69 71parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il