Analysis of interatomic Contacts of Structural Units in PDB entry:
1M17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M17 entry

There is 1 chain in PDB entry 1M17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 672PRO 995
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1M17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
684 686Right-handed 310
Helix 2
2
A
728 743Right-handed alpha
Helix 3
3
A
773 780Right-handed alpha
Helix 4
4
A
781 785Right-handed 310
Helix 5
5
A
786 807Right-handed alpha
Helix 6
6
A
815 817Right-handed 310
Helix 7
7
A
853 857Right-handed 310
Helix 8
8
A
858 865Right-handed alpha
Helix 9
9
A
868 885Right-handed alpha
Helix 10
10
A
895 905Right-handed alpha
Helix 11
11
A
916 926Right-handed alpha
Helix 12
12
A
930 934Right-handed 310
Helix 13
13
A
936 949Right-handed alpha
Helix 14
14
A
950 954Right-handed 310
Helix 15
15
A
988 992Right-handed 310
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There are 4 sheets in PDB entry 1M17. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 695first strand
Strand 2
A
701 707anti-parallel
Strand 3
A
716 722anti-parallel
Strand 4
A
762 767anti-parallel
Strand 5
A
753 758anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 810first strand
Strand 2
A
836 837anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 823first strand
Strand 2
A
826 829anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 846first strand
Strand 2
A
866 867anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il