Analysis of interatomic Contacts of Structural Units in PDB entry:
1M63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M63 entry

There are 10 chains in PDB entry 1M63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 372
B
 SER 12VAL 169
C
 MET 1GLU 165
D
 VAL 9VAL 9
D
 ALA 11ALA 11
E
 THR 14CYS 372
F
 MET 10VAL 169
G
 MET 1GLU 165
H
 VAL 9VAL 9
H
 ALA 11ALA 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 1M63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 35Right-handed alpha
Helix 2
2
A
42 51Right-handed alpha
Helix 3
3
A
57 74Right-handed alpha
Helix 4
4
A
94 105Right-handed alpha
Helix 5
5
A
125 140Right-handed alpha
Helix 6
6
A
153 160Right-handed alpha
Helix 7
7
A
161 170Right-handed alpha
Helix 8
8
A
171 184Right-handed alpha
Helix 9
9
A
208 214Right-handed alpha
Helix 10
10
A
225 233Right-handed alpha
Helix 11
11
A
261 272Right-handed alpha
Helix 12
12
A
310 314Right-handed 310
Helix 13
13
A
343 347Right-handed 310
Helix 14
14
A
348 370Right-handed alpha
Helix 15
15
B
15 30Right-handed alpha
Helix 16
16
B
53 62Right-handed alpha
Helix 17
17
B
70 79Right-handed alpha
Helix 18
18
B
86 99Right-handed alpha
Helix 19
19
B
107 119Right-handed alpha
Helix 20
20
B
124 140Right-handed alpha
Helix 21
21
B
148 154Right-handed alpha
Helix 22
22
C
29 42Right-handed alpha
Helix 23
23
C
119 122Right-handed 310
Helix 24
24
C
135 144Right-handed alpha
Helix 25
25
E
30 35Right-handed alpha
Helix 26
26
E
42 52Right-handed alpha
Helix 27
27
E
57 74Right-handed alpha
Helix 28
28
E
95 106Right-handed alpha
Helix 29
29
E
125 140Right-handed alpha
Helix 30
30
E
154 159Right-handed alpha
Helix 31
31
E
161 170Right-handed alpha
Helix 32
32
E
171 182Right-handed alpha
Helix 33
33
E
209 214Right-handed alpha
Helix 34
34
E
225 233Right-handed alpha
Helix 35
35
E
261 266Right-handed alpha
Helix 36
36
E
267 272Right-handed alpha
Helix 37
37
E
310 314Right-handed 310
Helix 38
38
E
343 347Right-handed 310
Helix 39
39
E
348 366Right-handed alpha
Helix 40
40
F
15 22Right-handed alpha
Helix 41
41
F
25 30Right-handed alpha
Helix 42
42
F
38 43Right-handed alpha
Helix 43
43
F
45 49Right-handed 310
Helix 44
44
F
55 60Right-handed alpha
Helix 45
45
F
71 78Right-handed alpha
Helix 46
46
F
79 82Right-handed 310
Helix 47
47
F
86 96Right-handed alpha
Helix 48
48
F
108 119Right-handed alpha
Helix 49
49
F
124 138Right-handed alpha
Helix 50
50
F
148 157Right-handed alpha
Helix 51
51
F
161 165Right-handed 310
Helix 52
52
G
29 42Right-handed alpha
Helix 53
53
G
119 123Right-handed 310
Helix 54
54
G
135 144Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1M63. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, EA, EB, EC, FA, FB, GA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
188 191parallel
Strand 3
A
195 197anti-parallel
Strand 4
A
276 278parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
112 115parallel
Strand 3
A
85 88parallel
Strand 4
A
319 325anti-parallel
Strand 5
A
328 334anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
258 260parallel
Strand 3
A
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
61 64anti-parallel
Strand 3
C
112 115anti-parallel
Strand 4
C
97 100anti-parallel
Strand 5
C
128 134anti-parallel
Strand 6
C
15 24anti-parallel
Strand 7
C
5 12anti-parallel
Strand 8
C
156 163anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 81first strand
Strand 2
E
188 191parallel
Strand 3
E
195 197anti-parallel
Strand 4
E
276 279parallel
Strand 5
E
302 305parallel
Strand 6
E
288 290anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
144 146first strand
Strand 2
E
113 117parallel
Strand 3
E
85 90parallel
Strand 4
E
319 325anti-parallel
Strand 5
E
328 334anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
234 235first strand
Strand 2
E
258 260parallel
Strand 3
E
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 37first strand
Strand 2
F
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
106 107first strand
Strand 2
F
146 147anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
51 52first strand
Strand 2
G
156 161anti-parallel
Strand 3
G
5 12anti-parallel
Strand 4
G
15 24anti-parallel
Strand 5
G
128 134anti-parallel
Strand 6
G
97 100anti-parallel
Strand 7
G
112 115anti-parallel
Strand 8
G
61 64anti-parallel
Strand 9
G
55 56anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il