Analysis of interatomic Contacts of Structural Units in PDB entry:
1M68


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M68 entry

There is 1 chain in PDB entry 1M68 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 2LEU 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1M68. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
56 59Right-handed 310
Helix 4
4
A
86 91Right-handed alpha
Helix 5
5
A
109 123Right-handed alpha
Helix 6
6
A
140 151Right-handed alpha
Helix 7
7
A
172 184Right-handed alpha
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
215 222Right-handed 310
Helix 11
11
A
223 234Right-handed alpha
Helix 12
12
A
239 243Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1M68. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
34 40parallel
Strand 3
A
66 75parallel
Strand 4
A
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
34 40parallel
Strand 3
A
66 75parallel
Strand 4
A
95 99parallel
Strand 5
A
128 129parallel
Strand 6
A
154 158parallel
Strand 7
A
187 190parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il