Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M6W entry

There are 2 chains in PDB entry 1M6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ILE 373
B
 ALA 1ILE 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1M6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 53Right-handed alpha
Helix 2
2
A
99 104Right-handed alpha
Helix 3
3
A
113 119Right-handed alpha
Helix 4
4
A
164 169Right-handed alpha
Helix 5
5
A
170 172Right-handed 310
Helix 6
6
A
173 184Right-handed alpha
Helix 7
7
A
200 213Right-handed alpha
Helix 8
8
A
224 226Right-handed 310
Helix 9
9
A
227 235Right-handed alpha
Helix 10
10
A
241 245Right-handed 310
Helix 11
11
A
248 257Right-handed alpha
Helix 12
12
A
270 280Right-handed alpha
Helix 13
13
A
303 309Right-handed alpha
Helix 14
14
A
317 321Right-handed 310
Helix 15
15
A
322 336Right-handed alpha
Helix 16
16
A
341 343Right-handed 310
Helix 17
17
A
353 363Right-handed alpha
Helix 18
18
B
44 53Right-handed alpha
Helix 19
19
B
99 104Right-handed alpha
Helix 20
20
B
113 119Right-handed alpha
Helix 21
21
B
164 169Right-handed alpha
Helix 22
22
B
170 172Right-handed 310
Helix 23
23
B
173 184Right-handed alpha
Helix 24
24
B
200 213Right-handed alpha
Helix 25
25
B
224 226Right-handed 310
Helix 26
26
B
227 235Right-handed alpha
Helix 27
27
B
241 245Right-handed 310
Helix 28
28
B
248 257Right-handed alpha
Helix 29
29
B
270 280Right-handed alpha
Helix 30
30
B
304 309Right-handed alpha
Helix 31
31
B
317 321Right-handed 310
Helix 32
32
B
322 336Right-handed alpha
Helix 33
33
B
341 343Right-handed 310
Helix 34
34
B
353 363Right-handed alpha
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There are 9 sheets in PDB entry 1M6W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
129 131anti-parallel
Strand 4
A
134 136anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
87 90anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
33 42anti-parallel
Strand 5
A
148 152anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
87 90anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
33 42anti-parallel
Strand 5
A
368 372anti-parallel
Strand 6
A
345 350parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
217 221parallel
Strand 3
A
193 197parallel
Strand 4
A
263 266parallel
Strand 5
A
287 291parallel
Strand 6
A
312 316parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
B
300 302anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
20 26anti-parallel
Strand 3
B
129 131anti-parallel
Strand 4
B
134 136anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
33 42anti-parallel
Strand 5
B
148 152anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
33 42anti-parallel
Strand 5
B
368 372anti-parallel
Strand 6
B
345 350parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
217 221parallel
Strand 3
B
193 197parallel
Strand 4
B
263 266parallel
Strand 5
B
287 290parallel
Strand 6
B
312 315parallel
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