Analysis of interatomic Contacts of Structural Units in PDB entry:
1M8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M8Y entry

There are 4 chains in PDB entry 1M8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 11 A 20
D
 A 11 A 20
A
 GLY 828TYR 1168
B
 GLY 828MET 1169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 1M8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
830 838Right-handed alpha
Helix 2
2
A
845 850Right-handed 310
Helix 3
3
A
852 858Right-handed alpha
Helix 4
4
A
859 871Right-handed alpha
Helix 5
5
A
874 886Right-handed alpha
Helix 6
6
A
888 894Right-handed alpha
Helix 7
7
A
898 909Right-handed alpha
Helix 8
8
A
910 922Right-handed alpha
Helix 9
9
A
924 930Right-handed alpha
Helix 10
10
A
933 945Right-handed alpha
Helix 11
11
A
946 956Right-handed alpha
Helix 12
12
A
960 966Right-handed alpha
Helix 13
13
A
969 981Right-handed alpha
Helix 14
14
A
982 985Right-handed 310
Helix 15
15
A
986 993Right-handed alpha
Helix 16
16
A
996 1002Right-handed alpha
Helix 17
17
A
1005 1017Right-handed alpha
Helix 18
18
A
1018 1032Right-handed alpha
Helix 19
19
A
1032 1037Right-handed alpha
Helix 20
20
A
1041 1053Right-handed alpha
Helix 21
21
A
1054 1066Right-handed alpha
Helix 22
22
A
1068 1074Right-handed alpha
Helix 23
23
A
1077 1089Right-handed alpha
Helix 24
24
A
1090 1104Right-handed alpha
Helix 25
25
A
1110 1117Right-handed alpha
Helix 26
26
A
1120 1132Right-handed alpha
Helix 27
27
A
1133 1145Right-handed alpha
Helix 28
28
A
1147 1152Right-handed alpha
Helix 29
29
A
1156 1165Right-handed alpha
Helix 30
30
B
830 838Right-handed alpha
Helix 31
31
B
845 850Right-handed 310
Helix 32
32
B
852 858Right-handed alpha
Helix 33
33
B
859 872Right-handed alpha
Helix 34
34
B
874 888Right-handed alpha
Helix 35
35
B
888 894Right-handed alpha
Helix 36
36
B
897 908Right-handed alpha
Helix 37
37
B
910 920Right-handed alpha
Helix 38
38
B
924 931Right-handed alpha
Helix 39
39
B
933 945Right-handed alpha
Helix 40
40
B
946 955Right-handed alpha
Helix 41
41
B
960 966Right-handed alpha
Helix 42
42
B
969 979Right-handed alpha
Helix 43
43
B
982 985Right-handed 310
Helix 44
44
B
986 994Right-handed alpha
Helix 45
45
B
996 1001Right-handed alpha
Helix 46
46
B
1005 1017Right-handed alpha
Helix 47
47
B
1018 1031Right-handed alpha
Helix 48
48
B
1032 1037Right-handed alpha
Helix 49
49
B
1041 1052Right-handed alpha
Helix 50
50
B
1054 1066Right-handed alpha
Helix 51
51
B
1068 1073Right-handed alpha
Helix 52
52
B
1077 1087Right-handed alpha
Helix 53
53
B
1092 1096Right-handed 310
Helix 54
54
B
1097 1102Right-handed alpha
Helix 55
55
B
1110 1116Right-handed alpha
Helix 56
56
B
1120 1132Right-handed alpha
Helix 57
57
B
1133 1141Right-handed alpha
Helix 58
58
B
1147 1153Right-handed alpha
Helix 59
59
B
1154 1156Right-handed 310
Helix 60
60
B
1157 1169Right-handed alpha
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There are no sheets in PDB entry 1M8Y
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