Analysis of interatomic Contacts of Structural Units in PDB entry:
1M9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M9S entry

There is 1 chain in PDB entry 1M9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 36GLN 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1M9S. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
44 48Right-handed alpha
Helix 2
2
A
50 61Right-handed alpha
Helix 3
3
A
71 76Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
113 119Right-handed 310
Helix 6
6
A
157 163Right-handed 310
Helix 7
7
A
179 184Right-handed 310
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
223 227Right-handed 310
Helix 10
10
A
419 421Right-handed 310
Helix 11
11
A
507 510Right-handed 310
Helix 12
12
A
552 554Right-handed 310
Helix 13
13
A
579 581Right-handed 310
Helix 14
14
A
588 590Right-handed 310
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There are 11 sheets in PDB entry 1M9S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 43first strand
Strand 2
A
69 70anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 104first strand
Strand 2
A
124 126parallel
Strand 3
A
146 148parallel
Strand 4
A
168 170parallel
Strand 5
A
190 192parallel
Strand 6
A
212 214parallel
Strand 7
A
234 236parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
240 243first strand
Strand 2
A
307 318parallel
Strand 3
A
293 304anti-parallel
Strand 4
A
271 272anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
254 256first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
277 279anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
411 413first strand
Strand 2
A
423 426anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
448 450first strand
Strand 2
A
456 458anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
535 541first strand
Strand 2
A
526 532anti-parallel
Strand 3
A
514 516anti-parallel
Strand 4
A
478 482anti-parallel
Strand 5
A
545 550anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
535 541first strand
Strand 2
A
526 532anti-parallel
Strand 3
A
520 521anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
489 490first strand
Strand 2
A
503 505anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
617 622first strand
Strand 2
A
606 612anti-parallel
Strand 3
A
595 603anti-parallel
Strand 4
A
555 563anti-parallel
Strand 5
A
626 627anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
571 573first strand
Strand 2
A
583 586anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il