Analysis of interatomic Contacts of Structural Units in PDB entry:
1MBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MBZ entry

There are 2 chains in PDB entry 1MBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ARG 507
B
 ALA 3THR 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1MBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 45Right-handed 310
Helix 2
2
A
57 60Right-handed 310
Helix 3
3
A
81 88Right-handed alpha
Helix 4
4
A
97 110Right-handed alpha
Helix 5
5
A
111 116Right-handed 310
Helix 6
6
A
157 162Right-handed alpha
Helix 7
7
A
218 238Right-handed alpha
Helix 8
8
A
251 266Right-handed alpha
Helix 9
9
A
280 292Right-handed alpha
Helix 10
10
A
301 308Right-handed alpha
Helix 11
11
A
308 317Right-handed alpha
Helix 12
12
A
320 336Right-handed alpha
Helix 13
13
A
362 376Right-handed alpha
Helix 14
14
A
385 390Right-handed alpha
Helix 15
15
A
397 400Right-handed 310
Helix 16
16
A
401 411Right-handed alpha
Helix 17
17
A
412 417Right-handed alpha
Helix 18
18
A
423 431Right-handed alpha
Helix 19
19
A
435 440Right-handed alpha
Helix 20
20
A
451 462Right-handed alpha
Helix 21
21
A
466 468Right-handed 310
Helix 22
22
A
469 486Right-handed alpha
Helix 23
23
A
491 495Right-handed 310
Helix 24
24
A
496 505Right-handed alpha
Helix 25
25
B
41 45Right-handed 310
Helix 26
26
B
57 60Right-handed 310
Helix 27
27
B
81 88Right-handed alpha
Helix 28
28
B
97 110Right-handed alpha
Helix 29
29
B
111 116Right-handed 310
Helix 30
30
B
158 163Right-handed alpha
Helix 31
31
B
218 238Right-handed alpha
Helix 32
32
B
251 266Right-handed alpha
Helix 33
33
B
280 292Right-handed alpha
Helix 34
34
B
301 307Right-handed alpha
Helix 35
35
B
308 317Right-handed alpha
Helix 36
36
B
320 335Right-handed alpha
Helix 37
37
B
362 375Right-handed alpha
Helix 38
38
B
385 390Right-handed alpha
Helix 39
39
B
397 400Right-handed 310
Helix 40
40
B
401 411Right-handed alpha
Helix 41
41
B
412 416Right-handed 310
Helix 42
42
B
423 431Right-handed alpha
Helix 43
43
B
435 440Right-handed alpha
Helix 44
44
B
454 464Right-handed alpha
Helix 45
45
B
466 468Right-handed 310
Helix 46
46
B
469 486Right-handed alpha
Helix 47
47
B
491 495Right-handed 310
Helix 48
48
B
496 507Right-handed alpha
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There are 6 sheets in PDB entry 1MBZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
11 17anti-parallel
Strand 4
A
151 155anti-parallel
Strand 5
A
144 148anti-parallel
Strand 6
A
185 186anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
71 79anti-parallel
Strand 3
A
119 127anti-parallel
Strand 4
A
130 135anti-parallel
Strand 5
A
191 196anti-parallel
Strand 6
A
201 206anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
269 275parallel
Strand 3
A
245 247parallel
Strand 4
A
343 345parallel
Strand 5
A
394 396parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
11 17anti-parallel
Strand 4
B
151 155anti-parallel
Strand 5
B
144 148anti-parallel
Strand 6
B
185 186anti-parallel
Strand 7
B
176 177anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
71 79anti-parallel
Strand 3
B
119 127anti-parallel
Strand 4
B
130 135anti-parallel
Strand 5
B
191 196anti-parallel
Strand 6
B
202 206anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
269 274parallel
Strand 3
B
245 247parallel
Strand 4
B
343 345parallel
Strand 5
B
394 396parallel
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