Analysis of interatomic Contacts of Structural Units in PDB entry:
1MDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MDZ entry

There is 1 chain in PDB entry 1MDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9ALA 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1MDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 33Right-handed alpha
Helix 2
2
A
38 53Right-handed alpha
Helix 3
3
A
62 74Right-handed alpha
Helix 4
4
A
89 99Right-handed alpha
Helix 5
5
A
116 124Right-handed alpha
Helix 6
6
A
135 139Right-handed 310
Helix 7
7
A
142 154Right-handed alpha
Helix 8
8
A
202 213Right-handed alpha
Helix 9
9
A
245 258Right-handed alpha
Helix 10
10
A
258 279Right-handed alpha
Helix 11
11
A
304 309Right-handed alpha
Helix 12
12
A
311 322Right-handed alpha
Helix 13
13
A
332 335Right-handed 310
Helix 14
14
A
336 343Right-handed alpha
Helix 15
15
A
348 357Right-handed alpha
Helix 16
16
A
368 383Right-handed alpha
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There are 5 sheets in PDB entry 1MDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
179 183anti-parallel
Strand 4
A
158 160parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
81 85parallel
Strand 3
A
128 131parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
168 169anti-parallel
Strand 3
A
292 293anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
234 235anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
299 302anti-parallel
Strand 3
A
358 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il