Analysis of interatomic Contacts of Structural Units in PDB entry:
1MF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MF8 entry

There are 5 chains in PDB entry 1MF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 20ILE 371
B
SER 5ASP 168
C
MET 1LEU 164
D
VAL 9VAL 9
D
ALA 11ALA 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 1MF8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
30 35Right-handed alpha
Helix 2
2
A
42 51Right-handed alpha
Helix 3
3
A
57 75Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
125 140Right-handed alpha
Helix 6
6
A
153 160Right-handed alpha
Helix 7
7
A
161 170Right-handed alpha
Helix 8
8
A
171 183Right-handed alpha
Helix 9
9
A
208 215Right-handed alpha
Helix 10
10
A
225 233Right-handed alpha
Helix 11
11
A
261 272Right-handed alpha
Helix 12
12
A
310 314Right-handed 310
Helix 13
13
A
343 347Right-handed 310
Helix 14
14
A
348 370Right-handed alpha
Helix 15
15
B
15 30Right-handed alpha
Helix 16
16
B
38 43Right-handed alpha
Helix 17
17
B
44 49Right-handed 310
Helix 18
18
B
53 62Right-handed alpha
Helix 19
19
B
71 79Right-handed alpha
Helix 20
20
B
80 82Right-handed 310
Helix 21
21
B
86 99Right-handed alpha
Helix 22
22
B
107 120Right-handed alpha
Helix 23
23
B
124 140Right-handed alpha
Helix 24
24
B
149 157Right-handed alpha
Helix 25
25
B
158 164Right-handed 310
Helix 26
26
C
29 42Right-handed alpha
Helix 27
27
C
119 122Right-handed 310
Helix 28
28
C
135 144Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1MF8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
78 81first strand
Strand 2
A
188 191parallel
Strand 3
A
195 197anti-parallel
Strand 4
A
276 279parallel
Strand 5
A
302 305parallel
Strand 6
A
288 290anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 115first strand
Strand 2
A
85 88parallel
Strand 3
A
319 325anti-parallel
Strand 4
A
328 334anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
234 235first strand
Strand 2
A
258 260parallel
Strand 3
A
249 250anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 37first strand
Strand 2
B
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
105 106first strand
Strand 2
B
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
55 57first strand
Strand 2
C
61 64anti-parallel
Strand 3
C
112 115anti-parallel
Strand 4
C
97 100anti-parallel
Strand 5
C
128 134anti-parallel
Strand 6
C
15 24anti-parallel
Strand 7
C
5 12anti-parallel
Strand 8
C
156 163anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il