Analysis of interatomic Contacts of Structural Units in PDB entry:
1MFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MFQ entry

There are 3 chains in PDB entry 1MFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
G 112 U 238
B
ARG 14GLN 120
C
LYS 323LYS 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1MFQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
19 24Right-handed 310
Helix 2
2
B
45 54Right-handed alpha
Helix 3
3
B
55 57Right-handed 310
Helix 4
4
B
101 112Right-handed alpha
Helix 5
5
B
115 120Right-handed alpha
Helix 6
6
C
328 339Right-handed alpha
Helix 7
7
C
342 348Right-handed alpha
Helix 8
8
C
365 380Right-handed alpha
Helix 9
9
C
383 388Right-handed alpha
Helix 10
10
C
391 399Right-handed alpha
Helix 11
11
C
400 410Right-handed alpha
Helix 12
12
C
413 434Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1MFQ.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
16 18first strand
Strand 2
B
81 85anti-parallel
Strand 3
B
59 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il