Analysis of interatomic Contacts of Structural Units in PDB entry:
1MGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MGV entry

There are 2 chains in PDB entry 1MGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 428
B
 MET 1CYS 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1MGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
61 75Right-handed alpha
Helix 3
3
A
86 99Right-handed alpha
Helix 4
4
A
111 130Right-handed alpha
Helix 5
5
A
148 153Right-handed alpha
Helix 6
6
A
161 166Right-handed 310
Helix 7
7
A
187 190Right-handed 310
Helix 8
8
A
191 201Right-handed alpha
Helix 9
9
A
225 239Right-handed alpha
Helix 10
10
A
258 264Right-handed 310
Helix 11
11
A
273 278Right-handed 310
Helix 12
12
A
289 298Right-handed alpha
Helix 13
13
A
313 329Right-handed alpha
Helix 14
14
A
331 348Right-handed alpha
Helix 15
15
A
349 353Right-handed 310
Helix 16
16
A
375 386Right-handed alpha
Helix 17
17
A
406 421Right-handed alpha
Helix 18
18
B
2 13Right-handed alpha
Helix 19
19
B
61 75Right-handed alpha
Helix 20
20
B
85 99Right-handed alpha
Helix 21
21
B
111 130Right-handed alpha
Helix 22
22
B
148 153Right-handed alpha
Helix 23
23
B
161 165Right-handed 310
Helix 24
24
B
187 190Right-handed 310
Helix 25
25
B
191 202Right-handed alpha
Helix 26
26
B
225 239Right-handed alpha
Helix 27
27
B
258 263Right-handed 310
Helix 28
28
B
273 278Right-handed 310
Helix 29
29
B
289 299Right-handed alpha
Helix 30
30
B
313 329Right-handed alpha
Helix 31
31
B
331 348Right-handed alpha
Helix 32
32
B
349 353Right-handed 310
Helix 33
33
B
375 386Right-handed alpha
Helix 34
34
B
406 422Right-handed alpha
Helix 35
35
B
423 427Right-handed 310
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There are 8 sheets in PDB entry 1MGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
44 47parallel
Strand 3
A
36 39anti-parallel
Strand 4
A
27 33anti-parallel
Strand 5
B
83 84parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
B
27 33parallel
Strand 3
B
36 39anti-parallel
Strand 4
B
44 47anti-parallel
Strand 5
B
388 389parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
269 272anti-parallel
Strand 4
A
241 245parallel
Strand 5
A
205 210parallel
Strand 6
A
136 140parallel
Strand 7
A
173 175parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
221 222anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 362first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
396 399anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
284 288anti-parallel
Strand 3
B
269 272anti-parallel
Strand 4
B
241 245parallel
Strand 5
B
205 210parallel
Strand 6
B
136 140parallel
Strand 7
B
173 175parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
221 222anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 362first strand
Strand 2
B
365 370anti-parallel
Strand 3
B
396 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il