Analysis of interatomic Contacts of Structural Units in PDB entry:
1MIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MIA entry

There are 3 chains in PDB entry 1MIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ASP 137
B
 LYS 138GLN 229
C
 ASP 502ASP 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1MIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 47Right-handed alpha
Helix 2
2
A
60 72Right-handed alpha
Helix 3
3
A
103 109Right-handed alpha
Helix 4
4
A
115 119Right-handed 310
Helix 5
5
B
166 177Right-handed alpha
Helix 6
6
B
183 199Right-handed alpha
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There are 4 sheets in PDB entry 1MIA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
10 18parallel
Strand 3
A
78 86parallel
Strand 4
A
123 128parallel
Strand 5
B
145 149parallel
Strand 6
B
216 219anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
100 102anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
B
154 155parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
158 160anti-parallel
Strand 3
C
503 504anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il