Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1MIC entry
There are 14 chains in PDB entry 1MIC
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 2 | ALA 3 |
A
|
ALA 5 | ALA 5 |
A
|
VAL 7 | VAL 7 |
A
|
TRP 9 | TRP 9 |
A
|
TRP 11 | TRP 11 |
A
|
TRP 13 | TRP 13 |
A
|
TRP 15 | TRP 15 |
B
|
GLY 2 | ALA 3 |
B
|
ALA 5 | ALA 5 |
B
|
VAL 7 | VAL 7 |
B
|
TRP 9 | TRP 9 |
B
|
TRP 11 | TRP 11 |
B
|
TRP 13 | TRP 13 |
B
|
TRP 15 | TRP 15 |
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There are 2
helices in PDB entry 1MIC. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
DH1 | A
| 2 |
15 | Right-handed alpha |
Helix 2 |
DH2 | B
| 2 |
15 | Right-handed alpha |
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There is
1 sheet ( AA) in PDB entry 1MIC.
There are 2
strands in AA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 3 |
13 | first strand |
Strand 2 |
B
| 3 |
13 | parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il