Analysis of interatomic Contacts of Structural Units in PDB entry:
1MKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MKD entry

There are 12 chains in PDB entry 1MKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 183SER 510
B
THR 183SER 510
C
THR 183SER 510
D
THR 183SER 510
E
THR 183SER 510
F
THR 183SER 510
G
THR 183SER 510
H
THR 183SER 510
I
THR 183SER 510
J
THR 183SER 510
K
THR 183SER 510
L
THR 183SER 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are264 helices in PDB entry 1MKD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
185 193Right-handed alpha
Helix 2
2
A
194 196Right-handed 310
Helix 3
3
A
202 210Right-handed alpha
Helix 4
4
A
213 226Right-handed alpha
Helix 5
5
A
227 232Right-handed alpha
Helix 6
6
A
235 249Right-handed alpha
Helix 7
7
A
258 274Right-handed alpha
Helix 8
8
A
275 279Right-handed 310
Helix 9
9
A
283 297Right-handed alpha
Helix 10
10
A
305 312Right-handed alpha
Helix 11
11
A
314 320Right-handed alpha
Helix 12
12
A
324 337Right-handed alpha
Helix 13
13
A
338 340Right-handed 310
Helix 14
14
A
350 367Right-handed alpha
Helix 15
15
A
368 371Right-handed 310
Helix 16
16
A
372 385Right-handed alpha
Helix 17
17
A
399 416Right-handed alpha
Helix 18
18
A
417 421Right-handed 310
Helix 19
19
A
422 448Right-handed alpha
Helix 20
20
A
461 473Right-handed alpha
Helix 21
21
A
473 485Right-handed alpha
Helix 22
22
A
489 507Right-handed alpha
Helix 23
23
B
185 193Right-handed alpha
Helix 24
24
B
194 196Right-handed 310
Helix 25
25
B
202 210Right-handed alpha
Helix 26
26
B
213 226Right-handed alpha
Helix 27
27
B
227 232Right-handed alpha
Helix 28
28
B
235 249Right-handed alpha
Helix 29
29
B
258 274Right-handed alpha
Helix 30
30
B
275 279Right-handed 310
Helix 31
31
B
283 297Right-handed alpha
Helix 32
32
B
305 312Right-handed alpha
Helix 33
33
B
314 320Right-handed alpha
Helix 34
34
B
324 337Right-handed alpha
Helix 35
35
B
338 340Right-handed 310
Helix 36
36
B
350 366Right-handed alpha
Helix 37
37
B
367 371Right-handed 310
Helix 38
38
B
372 385Right-handed alpha
Helix 39
39
B
399 416Right-handed alpha
Helix 40
40
B
417 421Right-handed 310
Helix 41
41
B
422 448Right-handed alpha
Helix 42
42
B
461 473Right-handed alpha
Helix 43
43
B
473 485Right-handed alpha
Helix 44
44
B
489 507Right-handed alpha
Helix 45
45
C
185 193Right-handed alpha
Helix 46
46
C
194 196Right-handed 310
Helix 47
47
C
202 210Right-handed alpha
Helix 48
48
C
213 226Right-handed alpha
Helix 49
49
C
227 232Right-handed alpha
Helix 50
50
C
235 249Right-handed alpha
Helix 51
51
C
258 274Right-handed alpha
Helix 52
52
C
275 279Right-handed 310
Helix 53
53
C
283 297Right-handed alpha
Helix 54
54
C
305 312Right-handed alpha
Helix 55
55
C
314 320Right-handed alpha
Helix 56
56
C
324 337Right-handed alpha
Helix 57
57
C
338 340Right-handed 310
Helix 58
58
C
350 366Right-handed alpha
Helix 59
59
C
367 371Right-handed 310
Helix 60
60
C
372 385Right-handed alpha
Helix 61
61
C
399 416Right-handed alpha
Helix 62
62
C
417 421Right-handed 310
Helix 63
63
C
422 448Right-handed alpha
Helix 64
64
C
461 473Right-handed alpha
Helix 65
65
C
473 485Right-handed alpha
Helix 66
66
C
489 507Right-handed alpha
Helix 67
67
D
185 193Right-handed alpha
Helix 68
68
D
194 196Right-handed 310
Helix 69
69
D
202 210Right-handed alpha
Helix 70
70
D
213 226Right-handed alpha
Helix 71
71
D
227 232Right-handed alpha
Helix 72
72
D
235 249Right-handed alpha
Helix 73
73
D
258 274Right-handed alpha
Helix 74
74
D
275 279Right-handed 310
Helix 75
75
D
283 297Right-handed alpha
Helix 76
76
D
305 312Right-handed alpha
Helix 77
77
D
314 320Right-handed alpha
Helix 78
78
D
324 337Right-handed alpha
Helix 79
79
D
338 340Right-handed 310
Helix 80
80
D
350 367Right-handed alpha
Helix 81
81
D
368 371Right-handed 310
Helix 82
82
D
372 385Right-handed alpha
Helix 83
83
D
399 416Right-handed alpha
Helix 84
84
D
417 421Right-handed 310
Helix 85
85
D
422 448Right-handed alpha
Helix 86
86
D
461 473Right-handed alpha
Helix 87
87
D
473 485Right-handed alpha
Helix 88
88
D
489 507Right-handed alpha
Helix 89
89
E
185 193Right-handed alpha
Helix 90
90
E
194 196Right-handed 310
Helix 91
91
E
202 210Right-handed alpha
Helix 92
92
E
213 226Right-handed alpha
Helix 93
93
E
227 232Right-handed alpha
Helix 94
94
E
235 249Right-handed alpha
Helix 95
95
E
258 274Right-handed alpha
Helix 96
96
E
275 279Right-handed 310
Helix 97
97
E
283 297Right-handed alpha
Helix 98
98
E
305 312Right-handed alpha
Helix 99
99
E
314 320Right-handed alpha
Helix 100
100
E
324 337Right-handed alpha
Helix 101
101
E
338 340Right-handed 310
Helix 102
102
E
350 366Right-handed alpha
Helix 103
103
E
367 371Right-handed 310
Helix 104
104
E
372 385Right-handed alpha
Helix 105
105
E
399 416Right-handed alpha
Helix 106
106
E
417 421Right-handed 310
Helix 107
107
E
422 448Right-handed alpha
Helix 108
108
E
461 473Right-handed alpha
Helix 109
109
E
473 485Right-handed alpha
Helix 110
110
E
489 507Right-handed alpha
Helix 111
111
F
185 193Right-handed alpha
Helix 112
112
F
194 196Right-handed 310
Helix 113
113
F
202 210Right-handed alpha
Helix 114
114
F
213 226Right-handed alpha
Helix 115
115
F
227 232Right-handed alpha
Helix 116
116
F
235 249Right-handed alpha
Helix 117
117
F
258 274Right-handed alpha
Helix 118
118
F
275 279Right-handed 310
Helix 119
119
F
283 297Right-handed alpha
Helix 120
120
F
305 312Right-handed alpha
Helix 121
121
F
314 320Right-handed alpha
Helix 122
122
F
324 337Right-handed alpha
Helix 123
123
F
338 340Right-handed 310
Helix 124
124
F
350 366Right-handed alpha
Helix 125
125
F
367 371Right-handed 310
Helix 126
126
F
372 385Right-handed alpha
Helix 127
127
F
399 416Right-handed alpha
Helix 128
128
F
417 421Right-handed 310
Helix 129
129
F
422 448Right-handed alpha
Helix 130
130
F
461 473Right-handed alpha
Helix 131
131
F
473 485Right-handed alpha
Helix 132
132
F
489 507Right-handed alpha
Helix 133
133
G
185 193Right-handed alpha
Helix 134
134
G
194 196Right-handed 310
Helix 135
135
G
202 210Right-handed alpha
Helix 136
136
G
213 226Right-handed alpha
Helix 137
137
G
227 232Right-handed alpha
Helix 138
138
G
235 249Right-handed alpha
Helix 139
139
G
258 274Right-handed alpha
Helix 140
140
G
275 279Right-handed 310
Helix 141
141
G
283 297Right-handed alpha
Helix 142
142
G
305 312Right-handed alpha
Helix 143
143
G
314 320Right-handed alpha
Helix 144
144
G
324 337Right-handed alpha
Helix 145
145
G
338 340Right-handed 310
Helix 146
146
G
350 367Right-handed alpha
Helix 147
147
G
368 371Right-handed 310
Helix 148
148
G
372 385Right-handed alpha
Helix 149
149
G
399 416Right-handed alpha
Helix 150
150
G
417 421Right-handed 310
Helix 151
151
G
422 448Right-handed alpha
Helix 152
152
G
461 473Right-handed alpha
Helix 153
153
G
473 485Right-handed alpha
Helix 154
154
G
489 507Right-handed alpha
Helix 155
155
H
185 193Right-handed alpha
Helix 156
156
H
194 196Right-handed 310
Helix 157
157
H
202 210Right-handed alpha
Helix 158
158
H
213 226Right-handed alpha
Helix 159
159
H
227 232Right-handed alpha
Helix 160
160
H
235 249Right-handed alpha
Helix 161
161
H
258 274Right-handed alpha
Helix 162
162
H
275 279Right-handed 310
Helix 163
163
H
283 297Right-handed alpha
Helix 164
164
H
305 312Right-handed alpha
Helix 165
165
H
314 320Right-handed alpha
Helix 166
166
H
324 337Right-handed alpha
Helix 167
167
H
338 340Right-handed 310
Helix 168
168
H
350 367Right-handed alpha
Helix 169
169
H
368 371Right-handed 310
Helix 170
170
H
372 385Right-handed alpha
Helix 171
171
H
399 416Right-handed alpha
Helix 172
172
H
417 421Right-handed 310
Helix 173
173
H
422 448Right-handed alpha
Helix 174
174
H
461 473Right-handed alpha
Helix 175
175
H
473 485Right-handed alpha
Helix 176
176
H
489 507Right-handed alpha
Helix 177
177
I
185 193Right-handed alpha
Helix 178
178
I
194 196Right-handed 310
Helix 179
179
I
202 210Right-handed alpha
Helix 180
180
I
213 226Right-handed alpha
Helix 181
181
I
227 232Right-handed alpha
Helix 182
182
I
235 249Right-handed alpha
Helix 183
183
I
258 274Right-handed alpha
Helix 184
184
I
275 279Right-handed 310
Helix 185
185
I
283 297Right-handed alpha
Helix 186
186
I
305 312Right-handed alpha
Helix 187
187
I
314 320Right-handed alpha
Helix 188
188
I
324 337Right-handed alpha
Helix 189
189
I
338 340Right-handed 310
Helix 190
190
I
350 367Right-handed alpha
Helix 191
191
I
368 371Right-handed 310
Helix 192
192
I
372 385Right-handed alpha
Helix 193
193
I
399 416Right-handed alpha
Helix 194
194
I
417 421Right-handed 310
Helix 195
195
I
422 448Right-handed alpha
Helix 196
196
I
461 473Right-handed alpha
Helix 197
197
I
473 485Right-handed alpha
Helix 198
198
I
489 507Right-handed alpha
Helix 199
199
J
185 193Right-handed alpha
Helix 200
200
J
194 196Right-handed 310
Helix 201
201
J
202 210Right-handed alpha
Helix 202
202
J
213 226Right-handed alpha
Helix 203
203
J
227 232Right-handed alpha
Helix 204
204
J
235 249Right-handed alpha
Helix 205
205
J
258 274Right-handed alpha
Helix 206
206
J
275 279Right-handed 310
Helix 207
207
J
283 297Right-handed alpha
Helix 208
208
J
305 312Right-handed alpha
Helix 209
209
J
314 320Right-handed alpha
Helix 210
210
J
324 337Right-handed alpha
Helix 211
211
J
338 340Right-handed 310
Helix 212
212
J
350 367Right-handed alpha
Helix 213
213
J
368 371Right-handed 310
Helix 214
214
J
372 385Right-handed alpha
Helix 215
215
J
399 416Right-handed alpha
Helix 216
216
J
417 421Right-handed 310
Helix 217
217
J
422 448Right-handed alpha
Helix 218
218
J
461 473Right-handed alpha
Helix 219
219
J
473 485Right-handed alpha
Helix 220
220
J
489 507Right-handed alpha
Helix 221
221
K
185 193Right-handed alpha
Helix 222
222
K
194 196Right-handed 310
Helix 223
223
K
202 210Right-handed alpha
Helix 224
224
K
213 226Right-handed alpha
Helix 225
225
K
227 232Right-handed alpha
Helix 226
226
K
235 249Right-handed alpha
Helix 227
227
K
258 274Right-handed alpha
Helix 228
228
K
275 279Right-handed 310
Helix 229
229
K
283 297Right-handed alpha
Helix 230
230
K
305 312Right-handed alpha
Helix 231
231
K
314 320Right-handed alpha
Helix 232
232
K
324 337Right-handed alpha
Helix 233
233
K
338 340Right-handed 310
Helix 234
234
K
350 366Right-handed alpha
Helix 235
235
K
367 371Right-handed 310
Helix 236
236
K
372 385Right-handed alpha
Helix 237
237
K
399 416Right-handed alpha
Helix 238
238
K
417 421Right-handed 310
Helix 239
239
K
422 448Right-handed alpha
Helix 240
240
K
461 473Right-handed alpha
Helix 241
241
K
473 485Right-handed alpha
Helix 242
242
K
489 507Right-handed alpha
Helix 243
243
L
185 193Right-handed alpha
Helix 244
244
L
194 196Right-handed 310
Helix 245
245
L
202 210Right-handed alpha
Helix 246
246
L
213 226Right-handed alpha
Helix 247
247
L
227 232Right-handed alpha
Helix 248
248
L
235 249Right-handed alpha
Helix 249
249
L
258 274Right-handed alpha
Helix 250
250
L
275 279Right-handed 310
Helix 251
251
L
283 297Right-handed alpha
Helix 252
252
L
305 312Right-handed alpha
Helix 253
253
L
314 320Right-handed alpha
Helix 254
254
L
324 337Right-handed alpha
Helix 255
255
L
338 340Right-handed 310
Helix 256
256
L
350 366Right-handed alpha
Helix 257
257
L
367 371Right-handed 310
Helix 258
258
L
372 385Right-handed alpha
Helix 259
259
L
399 416Right-handed alpha
Helix 260
260
L
417 421Right-handed 310
Helix 261
261
L
422 448Right-handed alpha
Helix 262
262
L
461 473Right-handed alpha
Helix 263
263
L
473 485Right-handed alpha
Helix 264
264
L
489 507Right-handed alpha
Back to top of page
There are no sheets in PDB entry 1MKD

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il