Analysis of interatomic Contacts of Structural Units in PDB entry:
1MKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MKY entry

There is 1 chain in PDB entry 1MKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1MKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 23Right-handed alpha
Helix 2
2
A
62 66Right-handed 310
Helix 3
3
A
68 80Right-handed alpha
Helix 4
4
A
96 110Right-handed alpha
Helix 5
5
A
122 130Right-handed alpha
Helix 6
6
A
130 135Right-handed alpha
Helix 7
7
A
136 138Right-handed 310
Helix 8
8
A
152 167Right-handed alpha
Helix 9
9
A
192 202Right-handed alpha
Helix 10
10
A
254 264Right-handed alpha
Helix 11
11
A
278 291Right-handed alpha
Helix 12
12
A
301 305Right-handed 310
Helix 13
13
A
307 310Right-handed 310
Helix 14
14
A
311 323Right-handed alpha
Helix 15
15
A
324 327Right-handed 310
Helix 16
16
A
341 357Right-handed alpha
Helix 17
17
A
361 374Right-handed alpha
Helix 18
18
A
408 423Right-handed alpha
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There are 3 sheets in PDB entry 1MKY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
3 7parallel
Strand 4
A
84 90parallel
Strand 5
A
113 118parallel
Strand 6
A
143 144parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
181 186parallel
Strand 5
A
266 272parallel
Strand 6
A
294 300parallel
Strand 7
A
331 333parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 391first strand
Strand 2
A
396 401anti-parallel
Strand 3
A
432 437parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il