Analysis of interatomic Contacts of Structural Units in PDB entry:
1ML3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ML3 entry

There are 4 chains in PDB entry 1ML3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 359
B
MET 1LEU 359
C
MET 1LEU 359
D
MET 1LEU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 1ML3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
93 97Right-handed 310
Helix 4
4
A
98 103Right-handed alpha
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
121 126Right-handed alpha
Helix 7
7
A
149 153Right-handed 310
Helix 8
8
A
167 181Right-handed alpha
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
216 220Right-handed 310
Helix 11
11
A
227 236Right-handed alpha
Helix 12
12
A
237 240Right-handed 310
Helix 13
13
A
269 283Right-handed alpha
Helix 14
14
A
297 302Right-handed 310
Helix 15
15
A
312 318Right-handed alpha
Helix 16
16
A
336 356Right-handed alpha
Helix 17
17
B
11 24Right-handed alpha
Helix 18
18
B
42 52Right-handed alpha
Helix 19
19
B
93 97Right-handed 310
Helix 20
20
B
98 103Right-handed alpha
Helix 21
21
B
118 120Right-handed 310
Helix 22
22
B
121 126Right-handed alpha
Helix 23
23
B
149 153Right-handed 310
Helix 24
24
B
167 181Right-handed alpha
Helix 25
25
B
211 215Right-handed 310
Helix 26
26
B
216 220Right-handed 310
Helix 27
27
B
227 236Right-handed alpha
Helix 28
28
B
237 240Right-handed 310
Helix 29
29
B
269 282Right-handed alpha
Helix 30
30
B
297 302Right-handed 310
Helix 31
31
B
312 317Right-handed alpha
Helix 32
32
B
336 357Right-handed alpha
Helix 33
33
C
11 24Right-handed alpha
Helix 34
34
C
42 52Right-handed alpha
Helix 35
35
C
93 97Right-handed 310
Helix 36
36
C
118 120Right-handed 310
Helix 37
37
C
121 126Right-handed alpha
Helix 38
38
C
149 153Right-handed 310
Helix 39
39
C
167 181Right-handed alpha
Helix 40
40
C
211 215Right-handed 310
Helix 41
41
C
216 220Right-handed 310
Helix 42
42
C
227 236Right-handed alpha
Helix 43
43
C
237 240Right-handed 310
Helix 44
44
C
269 283Right-handed alpha
Helix 45
45
C
297 302Right-handed 310
Helix 46
46
C
312 317Right-handed alpha
Helix 47
47
C
336 356Right-handed alpha
Helix 48
48
D
11 24Right-handed alpha
Helix 49
49
D
42 51Right-handed alpha
Helix 50
50
D
93 97Right-handed 310
Helix 51
51
D
98 103Right-handed alpha
Helix 52
52
D
116 121Right-handed alpha
Helix 53
53
D
121 126Right-handed alpha
Helix 54
54
D
149 153Right-handed 310
Helix 55
55
D
165 181Right-handed alpha
Helix 56
56
D
211 215Right-handed 310
Helix 57
57
D
216 220Right-handed 310
Helix 58
58
D
230 235Right-handed 310
Helix 59
59
D
236 240Right-handed 310
Helix 60
60
D
269 283Right-handed alpha
Helix 61
61
D
297 302Right-handed 310
Helix 62
62
D
312 317Right-handed alpha
Helix 63
63
D
336 358Right-handed alpha
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There are 10 sheets in PDB entry 1ML3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
63 66first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
83 89anti-parallel
Strand 4
A
31 38parallel
Strand 5
A
3 8parallel
Strand 6
A
106 109parallel
Strand 7
A
130 133parallel
Strand 8
A
160 162parallel
Strand 9
A
142 143parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
222 225first strand
Strand 2
A
243 250anti-parallel
Strand 3
A
187 195parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
326 333anti-parallel
Strand 6
A
308 311anti-parallel
Strand 7
A
289 292parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 35first strand
Strand 2
B
3 8parallel
Strand 3
B
106 109parallel
Strand 4
B
130 133parallel
Strand 5
B
160 162parallel
Strand 6
B
142 143parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
63 66first strand
Strand 2
B
77 80anti-parallel
Strand 3
B
83 86anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
222 225first strand
Strand 2
B
243 250anti-parallel
Strand 3
B
187 195parallel
Strand 4
B
256 263anti-parallel
Strand 5
B
326 333anti-parallel
Strand 6
B
308 311anti-parallel
Strand 7
B
289 292parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
65 66first strand
Strand 2
C
77 78anti-parallel
Strand 3
C
85 89anti-parallel
Strand 4
C
33 38parallel
Strand 5
C
5 8parallel
Strand 6
C
106 109parallel
Strand 7
C
131 133parallel
Strand 8
C
160 162parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
222 225first strand
Strand 2
C
243 250anti-parallel
Strand 3
C
185 195parallel
Strand 4
C
256 264anti-parallel
Strand 5
C
326 333anti-parallel
Strand 6
C
308 311anti-parallel
Strand 7
C
289 292parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
63 66first strand
Strand 2
D
77 80anti-parallel
Strand 3
D
83 89anti-parallel
Strand 4
D
31 38parallel
Strand 5
D
3 8parallel
Strand 6
D
106 109parallel
Strand 7
D
130 133parallel
Strand 8
D
160 162parallel
Strand 9
D
142 143parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
52 53first strand
Strand 2
D
57 58anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
222 225first strand
Strand 2
D
243 250anti-parallel
Strand 3
D
185 195parallel
Strand 4
D
256 264anti-parallel
Strand 5
D
326 333anti-parallel
Strand 6
D
308 311anti-parallel
Strand 7
D
289 292parallel
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